[HTML][HTML] TOPAS-Tissue: A Framework for the Simulation of the Biological Response to Ionizing Radiation at the Multi-Cellular Level

OR García García, R Ortiz, E Moreno-Barbosa… - International Journal of …, 2024 - mdpi.com
This work aims to develop and validate a framework for the multiscale simulation of the
biological response to ionizing radiation in a population of cells forming a tissue. We present …

Biological multiscale computational modeling: A promising tool for 3D bioprinting and tissue engineering

BC dos Santos, PY Noritomi, JVL da Silva, IA Maia… - Bioprinting, 2022 - Elsevier
The progress of three-dimensional (3D) bioprinting techniques has driven several advances
in tissue engineering (TE), which allow the obtention of biological constructs analogous to …

Large-Scale Parameter Studies of Cell-Based Models of Tissue Morphogenesis Using CompuCell3D or VirtualLeaf

MM Palm, RMH Merks - Tissue Morphogenesis: Methods and Protocols, 2015 - Springer
Computational, cell-based models, such as the cellular Potts model (CPM), have become a
widely used tool to study tissue formation. Most cell-based models mimic the physical …

Manipulating extracellular matrix organizations and parameters to control local cancer invasion

A Pal, P Haliti, B Dharmadhikari, W Qi… - … /ACM Transactions on …, 2020 - ieeexplore.ieee.org
Metastasis contributes to over 90 percent of cancer mortalities and may be influenced by the
extracellular matrix (ECM). ECM microenvironments differ in matrix organization, cell-matrix …

Competing mechanisms in bacterial invasion of human colon mucus probed with agent-based modeling

Z Yan, J Yeo - Biophysical Journal, 2024 - cell.com
The gastrointestinal tract is inhabited by a vast community of microorganisms, termed the gut
microbiota. Large colonies can pose a health threat, but the gastrointestinal mucus system …

Comparative surface energetic study of Matrigel® and collagen I interactions with endothelial cells

MJ Hill, D Sarkar - Colloids and Surfaces B: Biointerfaces, 2017 - Elsevier
Understanding of the surface energetic aspects of the spontaneously deposited proteins on
biomaterial surfaces and how this influences cell adhesion and differentiation is an area of …

[PDF][PDF] The emergence of biofilms

V Sheraton Muniraj - 2019 - pure.uva.nl
Bacteria are single cell organisms, which are ubiquitous in nature. They perform different
functions in nature depending on their biological needs and can act as decomposers [1] …

Modelagem e simulação de mobilidade celular

ED Susin - 2013 - lume.ufrgs.br
Encarando os processos internos de uma célula em migração com um ponto de vista
estatístico, propõe-se um modelo matemático, no ambiente computacional CompuCell3D …