[PDF][PDF] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …
to determine three-dimensional macromolecular structures, which are required to …
[PDF][PDF] Implications of AlphaFold2 for crystallographic phasing by molecular replacement
The AlphaFold2 results in the 14th edition of Critical Assessment of Structure Prediction
(CASP14) showed that accurate (low root-mean-square deviation) in silico models of protein …
(CASP14) showed that accurate (low root-mean-square deviation) in silico models of protein …
Large language models generate functional protein sequences across diverse families
Deep-learning language models have shown promise in various biotechnological
applications, including protein design and engineering. Here we describe ProGen, a …
applications, including protein design and engineering. Here we describe ProGen, a …
Design of protein-binding proteins from the target structure alone
The design of proteins that bind to a specific site on the surface of a target protein using no
information other than the three-dimensional structure of the target remains a challenge …
information other than the three-dimensional structure of the target remains a challenge …
Accurate prediction of protein structures and interactions using a three-track neural network
DeepMind presented notably accurate predictions at the recent 14th Critical Assessment of
Structure Prediction (CASP14) conference. We explored network architectures that …
Structure Prediction (CASP14) conference. We explored network architectures that …
[PDF][PDF] ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps
TI Croll - Acta Crystallographica Section D: Structural Biology, 2018 - journals.iucr.org
This paper introduces ISOLDE, a new software package designed to provide an intuitive
environment for high-fidelity interactive remodelling/refinement of macromolecular models …
environment for high-fidelity interactive remodelling/refinement of macromolecular models …
Enhanced rare-earth separation with a metal-sensitive lanmodulin dimer
Technologically critical rare-earth elements are notoriously difficult to separate, owing to
their subtle differences in ionic radius and coordination number,–. The natural lanthanide …
their subtle differences in ionic radius and coordination number,–. The natural lanthanide …
De novo design of potent and selective mimics of IL-2 and IL-15
We describe a de novo computational approach for designing proteins that recapitulate the
binding sites of natural cytokines, but are otherwise unrelated in topology or amino acid …
binding sites of natural cytokines, but are otherwise unrelated in topology or amino acid …
[PDF][PDF] Polder maps: improving OMIT maps by excluding bulk solvent
The crystallographic maps that are routinely used during the structure-solution workflow are
almost always model-biased because model information is used for their calculation. As …
almost always model-biased because model information is used for their calculation. As …
Cap-specific terminal N6-methylation of RNA by an RNA polymerase II–associated methyltransferase
INTRODUCTION N 6-methyladenosine (m6A), an abundant modification in eukaryotic
mRNAs and long-noncoding RNAs, has been recognized as a major epitranscriptome mark …
mRNAs and long-noncoding RNAs, has been recognized as a major epitranscriptome mark …