Map** epigenetic modifications by sequencing technologies

X Chen, H Xu, X Shu, CX Song - Cell Death & Differentiation, 2025 - nature.com
The “epigenetics” concept was first described in 1942. Thus far, chemical modifications on
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …

Quantification and map** of RNA modifications

J ** with high-accuracy nanopore RNA basecalling models
G Diensthuber, LP Pryszcz, L Llovera… - Genome …, 2024 - genome.cshlp.org
In recent years, nanopore direct RNA sequencing (DRS) became a valuable tool for
studying the epitranscriptome, owing to its ability to detect multiple modifications within the …

Emerging and re-emerging themes in co-transcriptional pre-mRNA splicing

TJ Carrocci, KM Neugebauer - Molecular Cell, 2024 - cell.com
Proper gene expression requires the collaborative effort of multiple macromolecular
machines to produce functional messenger RNA. As RNA polymerase II (RNA Pol II) …

General principles and limitations for detection of RNA modifications by sequencing

Y Motorin, M Helm - Accounts of chemical research, 2023 - ACS Publications
Conspectus Among the many analytical methods applied to RNA modifications, a
particularly pronounced surge has occurred in the past decade in the field of modification …

Genomes in clinical care

O Riess, M Sturm, B Menden, A Liebmann… - Npj Genomic …, 2024 - nature.com
In the era of precision medicine, genome sequencing (GS) has become more affordable and
the importance of genomics and multi-omics in clinical care is increasingly being …

Integrative omics approaches to advance rare disease diagnostics

D Smirnov, N Konstantinovskiy… - Journal of Inherited …, 2023 - Wiley Online Library
Over the past decade high‐throughput DNA sequencing approaches, namely whole exome
and whole genome sequencing became a standard procedure in Mendelian disease …

All the sites we cannot see: Sources and mitigation of false negatives in RNA modification studies

S Oberdoeffer, WV Gilbert - Nature Reviews Molecular Cell Biology, 2024 - nature.com
RNA modifications are essential for human health—too much or too little of them leads to
serious illnesses ranging from neurodevelopmental disorders to cancer. Technical …

Epigenetics and plant hormone dynamics: a functional and methodological perspective

J Rudolf, L Tomovicova, K Panzarova… - Journal of …, 2024 - academic.oup.com
Plant hormones, pivotal regulators of plant growth, development, and response to
environmental cues, have recently emerged as central modulators of epigenetic processes …