Known unknowns of cardiolipin signaling: the best is yet to come

JJ Maguire, YY Tyurina, D Mohammadyani… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Since its discovery 75 years ago, a wealth of knowledge has accumulated on the role of
cardiolipin, the hallmark phospholipid of mitochondria, in bioenergetics and particularly on …

The functional impact of alternative splicing in cancer

H Climente-González, E Porta-Pardo, A Godzik… - Cell reports, 2017 - cell.com
Alternative splicing changes are frequently observed in cancer and are starting to be
recognized as important signatures for tumor progression and therapy. However, their …

[HTML][HTML] Benchmarking the accuracy of AlphaFold 2 in loop structure prediction

AO Stevens, Y He - Biomolecules, 2022 - mdpi.com
The inhibition of protein–protein interactions is a growing strategy in drug development. In
addition to structured regions, many protein loop regions are involved in protein–protein …

On protein loops, prior molecular states and common ancestors of life

K Caetano-Anollés, MF Aziz, F Mughal… - Journal of Molecular …, 2024 - Springer
The principle of continuity demands the existence of prior molecular states and common
ancestors responsible for extant macromolecular structure. Here, we focus on the …

Engineering extrinsic disorder to control protein activity in living cells

O Dagliyan, M Tarnawski, PH Chu, D Shirvanyants… - Science, 2016 - science.org
Optogenetic and chemogenetic control of proteins has revealed otherwise inaccessible
facets of signaling dynamics. Here, we use light-or ligand-sensitive domains to modulate the …

The Protein Data Bank archive as an open data resource

HM Berman, GJ Kleywegt, H Nakamura… - Journal of computer …, 2014 - Springer
Abstract The Protein Data Bank archive was established in 1971, and recently celebrated its
40th anniversary (Berman et al. in Structure 20: 391, 2012). An analysis of interrelationships …

Cardiolipin interactions with proteins

J Planas-Iglesias, H Dwarakanath, D Mohammadyani… - Biophysical journal, 2015 - cell.com
Cardiolipins (CL) represent unique phospholipids of bacteria and eukaryotic mitochondria
with four acyl chains and two phosphate groups that have been implicated in numerous …

Extension of the classical classification of β-turns

AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D)
structure. These properties have classically been assigned, visualized and analysed on the …

The N-terminal phosphorylation of RB by p38 bypasses its inactivation by CDKs and prevents proliferation in cancer cells

A Gubern, M Joaquin, M Marques, P Maseres… - Molecular cell, 2016 - cell.com
Control of the G1/S phase transition by the Retinoblastoma (RB) tumor suppressor is critical
for the proliferation of normal cells in tissues, and its inactivation is one of the most …

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

J Planas-Iglesias, F Opaleny, P Ulbrich… - Nucleic Acids …, 2022 - academic.oup.com
The transplantation of loops between structurally related proteins is a compelling method to
improve the activity, specificity and stability of enzymes. However, despite the interest of loop …