Role of non-coding sequence variants in cancer
Patients with cancer carry somatic sequence variants in their tumour in addition to the
germline variants in their inherited genome. Although variants in protein-coding regions …
germline variants in their inherited genome. Although variants in protein-coding regions …
Overcoming challenges and dogmas to understand the functions of pseudogenes
Pseudogenes are defined as regions of the genome that contain defective copies of genes.
They exist across almost all forms of life, and in mammalian genomes are annotated in …
They exist across almost all forms of life, and in mammalian genomes are annotated in …
GENCODE reference annotation for the human and mouse genomes
The accurate identification and description of the genes in the human and mouse genomes
is a fundamental requirement for high quality analysis of data informing both genome …
is a fundamental requirement for high quality analysis of data informing both genome …
GENCODE: the reference human genome annotation for The ENCODE Project
The GENCODE Consortium aims to identify all gene features in the human genome using a
combination of computational analysis, manual annotation, and experimental validation …
combination of computational analysis, manual annotation, and experimental validation …
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Large intergenic noncoding RNAs (lincRNAs) are emerging as key regulators of diverse
cellular processes. Determining the function of individual lincRNAs remains a challenge …
cellular processes. Determining the function of individual lincRNAs remains a challenge …
A super pan-genomic landscape of rice
L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin… - Cell Research, 2022 - nature.com
Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …
genomic complexity. Using de novo long-read assembly, we generated a graph-based …
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
P Lamesch, TZ Berardini, D Li, D Swarbreck… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is a genome
database for Arabidopsis thaliana, an important reference organism for many fundamental …
database for Arabidopsis thaliana, an important reference organism for many fundamental …
ENCODE data in the UCSC Genome Browser: year 5 update
Abstract The Encyclopedia of DNA Elements (ENCODE), http://encodeproject. org, has
completed its fifth year of scientific collaboration to create a comprehensive catalog of …
completed its fifth year of scientific collaboration to create a comprehensive catalog of …
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium - PLoS biology, 2011 - journals.plos.org
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the
scientific and medical communities to interpret the human genome sequence and apply it to …
scientific and medical communities to interpret the human genome sequence and apply it to …
Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum
Metarhizium spp. are being used as environmentally friendly alternatives to chemical
insecticides, as model systems for studying insect-fungus interactions, and as a resource of …
insecticides, as model systems for studying insect-fungus interactions, and as a resource of …