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The transformational role of GPU computing and deep learning in drug discovery
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …
importance to drug discovery, such as medicinal chemistry and pharmacology. This …
Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking
With the recent explosion of chemical libraries beyond a billion molecules, more efficient
virtual screening approaches are needed. The Deep Docking (DD) platform enables up to …
virtual screening approaches are needed. The Deep Docking (DD) platform enables up to …
Uncertainty quantification in classical molecular dynamics
Molecular dynamics simulation is now a widespread approach for understanding complex
systems on the atomistic scale. It finds applications from physics and chemistry to …
systems on the atomistic scale. It finds applications from physics and chemistry to …
The globus compute dataset: An open function-as-a-service dataset from the edge to the cloud
We present a unique function-as-a-service (FaaS) dataset capturing the use of the Globus
Compute (previously funcX) platform. Globus Compute implements a federated model via …
Compute (previously funcX) platform. Globus Compute implements a federated model via …
AI-coupled HPC workflow applications, middleware and performance
AI integration is revolutionizing the landscape of HPC simulations, enhancing the
importance, use, and performance of AI-driven HPC workflows. This paper surveys the …
importance, use, and performance of AI-driven HPC workflows. This paper surveys the …
Frontiers in scientific workflows: Pervasive integration with high-performance computing
We address the increasing complexity of scientific workflows in the context of high-
performance computing (HPC) and their associated need for robust, adaptable, and flexible …
performance computing (HPC) and their associated need for robust, adaptable, and flexible …
Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning-and physics-based simulations on high …
The race to meet the challenges of the global pandemic has served as a reminder that the
existing drug discovery process is expensive, inefficient and slow. There is a major …
existing drug discovery process is expensive, inefficient and slow. There is a major …
Large scale study of ligand–protein relative binding free energy calculations: actionable predictions from statistically robust protocols
The accurate and reliable prediction of protein–ligand binding affinities can play a central
role in the drug discovery process as well as in personalized medicine. Of considerable …
role in the drug discovery process as well as in personalized medicine. Of considerable …
Long time scale ensemble methods in molecular dynamics: Ligand–protein interactions and allostery in SARS-CoV-2 targets
We subject a series of five protein–ligand systems which contain important SARS-CoV-2
targets, 3-chymotrypsin-like protease (3CLPro), papain-like protease, and adenosine ribose …
targets, 3-chymotrypsin-like protease (3CLPro), papain-like protease, and adenosine ribose …
Pre‐exascale HPC approaches for molecular dynamics simulations. Covid‐19 research: A use case
Exascale computing has been a dream for ages and is close to becoming a reality that will
impact how molecular simulations are being performed, as well as the quantity and quality of …
impact how molecular simulations are being performed, as well as the quantity and quality of …