Forest tree genomics: growing resources and applications

DB Neale, A Kremer - Nature Reviews Genetics, 2011 - nature.com
Over the past two decades, research in forest tree genomics has lagged behind that of
model and agricultural systems. However, genomic research in forest trees is poised to enter …

The genomics of local adaptation in trees: are we out of the woods yet?

BM Lind, M Menon, CE Bolte, TM Faske… - Tree genetics & …, 2018 - Springer
There is substantial interest in uncovering the genetic basis of the traits underlying adaptive
responses in tree species, as this information will ultimately aid conservation and industrial …

[書籍][B] Handbook of plant and crop stress

M Pessarakli - 2019 - books.google.com
Since the publication of the third edition of the Handbook of Plant and Crop Stress,
continuous discoveries in the fields of plant and crop environmental stresses and their …

Contrasting rates of molecular evolution and patterns of selection among gymnosperms and flowering plants

AR De La Torre, Z Li, Y Van de Peer… - … biology and evolution, 2017 - academic.oup.com
The majority of variation in rates of molecular evolution among seed plants remains both
unexplored and unexplained. Although some attention has been given to flowering plants …

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

E Buschiazzo, C Ritland, J Bohlmann… - BMC Evolutionary …, 2012 - Springer
Background Comparative genomics can inform us about the processes of mutation and
selection across diverse taxa. Among seed plants, gymnosperms have been lacking in …

Single-copy genes as molecular markers for phylogenomic studies in seed plants

Z Li, AR De La Torre, L Sterck… - Genome Biology and …, 2017 - academic.oup.com
Phylogenetic relationships among seed plant taxa, especially within the gymnosperms,
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …

275 years of forestry meets genomics in Pinus sylvestris

T Pyhäjärvi, ST Kujala… - Evolutionary Applications, 2020 - Wiley Online Library
Pinus sylvestris has a long history of basic and applied research that is relevant for both
forestry and evolutionary studies. Its patterns of adaptive variation and role in forest …

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

M Parks, R Cronn, A Liston - BMC Evolutionary Biology, 2012 - Springer
Background Through next-generation sequencing, the amount of sequence data potentially
available for phylogenetic analyses has increased exponentially in recent years …

Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas fir (Pseudotsuga …

AJ Eckert, JL Wegrzyn, B Pande, KD Jermstad… - Genetics, 2009 - academic.oup.com
Forest trees exhibit remarkable adaptations to their environments. The genetic basis for
phenotypic adaptation to climatic gradients has been established through a long history of …

Genome-Wide Analysis Reveals Diverged Patterns of Codon Bias, Gene Expression, and Rates of Sequence Evolution in Picea Gene Families

AR De La Torre, YC Lin, Y Van de Peer… - Genome biology and …, 2015 - academic.oup.com
The recent sequencing of several gymnosperm genomes has greatly facilitated studying the
evolution of their genes and gene families. In this study, we examine the evidence for …