Pseudomonas putida KT2440: the long journey of a soil-dweller to become a synthetic biology chassis

V de Lorenzo, D Pérez-Pantoja, PI Nikel - Journal of bacteriology, 2024 - journals.asm.org
Although members of the genus Pseudomonas share specific morphological, metabolic, and
genomic traits, the diversity of niches and lifestyles adopted by the family members is vast …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Systematics and phylogeny of the entomopathogenic nematobacterial complexes Steinernema–Xenorhabdus and HeterorhabditisPhotorhabdus

V Půža, RAR Machado - Zoological Letters, 2024 - Springer
Entomopathogenic nematodes of the genera Steinernema and Heterorhabditis, along with
their bacterial symbionts from the genera Xenorhabdus and Photorhabdus, respectively, are …

Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

R Riesco, ME Trujillo - International Journal of Systematic …, 2024 - microbiologyresearch.org
The field of microbial taxonomy is dynamic, aiming to provide a stable and contemporary
classification system for prokaryotes. Traditionally, reliance on phenotypic characteristics …

Syntrophic entanglements for propionate and acetate oxidation under thermophilic and high-ammonia conditions

A Singh, A Schnürer, J Dolfing… - The ISME …, 2023 - academic.oup.com
Propionate is a key intermediate in anaerobic digestion processes and often accumulates in
association with perturbations, such as elevated levels of ammonia. Under such conditions …

Genome analysis of a coral-associated bacterial consortium highlights complementary hydrocarbon degradation ability and other beneficial mechanisms for the host

H Villela, F Modolon, J Schultz… - Scientific Reports, 2023 - nature.com
Here we report the oil degradation genetic potential of six oil-degrading bacteria (ODB),
previously used as a bioremediation consortium, isolated from the hydrocoral Millepora …

The phenotype and genotype of fermentative prokaryotes

TJ Hackmann, B Zhang - Science Advances, 2023 - science.org
Fermentation is a type of metabolism pervasive in oxygen-deprived environments. Despite
its importance, we know little about the range and traits of organisms that carry out this …

Whole-genome sequence of Streptomyces pluripotens strain MUM 16J, a potential resource of glycopeptide antibiotic and biocontrol agent against biofilm-forming …

P Pusparajah, JWF Law, KG Chan… - … In Microbes & …, 2023 - journals.hh-publisher.com
Streptomyces pluripotens strain MUM 16J is a Gram-positive filamentous bacteria isolated
from mangrove soil in Kampung Trombol area of Kuching, Sarawak. The draft genome of …

Unlocking the genomic potential of Red Sea coral probiotics

I Raimundo, PM Rosado, AR Barno, CP Antony… - Scientific Reports, 2024 - nature.com
The application of beneficial microorganisms for corals (BMC) decreases the bleaching
susceptibility and mortality rate of corals. BMC selection is typically performed via molecular …

Genome-Based Taxonomy of the Genus Stutzerimonas and Proposal of S. frequens sp. nov. and S. degradans sp. nov. and Emended Descriptions of S …

M Gomila, M Mulet, E García-Valdés, J Lalucat - Microorganisms, 2022 - mdpi.com
Stutzerimonas is a recently proposed genus within the Pseudomonadaceae comprising
strains in the formerly phylogenetic group of Pseudomonas stutzeri. At least sixteen named …