Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
Doublet identification in single-cell sequencing data using scDblFinder
Doublets are prevalent in single-cell sequencing data and can lead to artifactual findings. A
number of strategies have therefore been proposed to detect them. Building on the strengths …
number of strategies have therefore been proposed to detect them. Building on the strengths …
Integrating population genetics, stem cell biology and cellular genomics to study complex human diseases
Human pluripotent stem (hPS) cells can, in theory, be differentiated into any cell type,
making them a powerful in vitro model for human biology. Recent technological advances …
making them a powerful in vitro model for human biology. Recent technological advances …
MitoSort: Robust Demultiplexing of Pooled Single-cell Genomic Data Using Endogenous Mitochondrial Variants
Multiplexing across donors has emerged as a popular strategy to increase throughput,
reduce costs, overcome technical batch effects, and improve doublet detection in single-cell …
reduce costs, overcome technical batch effects, and improve doublet detection in single-cell …
Spatial multiomic landscape of the human placenta at molecular resolution
JR Ounadjela, K Zhang, KJ Kobayashi-Kirschvink… - Nature Medicine, 2024 - nature.com
Successful pregnancy relies directly on the placenta's complex, dynamic, gene-regulatory
networks. Disruption of this vast collection of intercellular and intracellular programs leads to …
networks. Disruption of this vast collection of intercellular and intracellular programs leads to …
Benchmarking single-cell hashtag oligo demultiplexing methods
Sample multiplexing is often used to reduce cost and limit batch effects in single-cell RNA
sequencing (scRNA-seq) experiments. A commonly used multiplexing technique involves …
sequencing (scRNA-seq) experiments. A commonly used multiplexing technique involves …
A village in a dish model system for population-scale hiPSC studies
The mechanisms by which DNA alleles contribute to disease risk, drug response, and other
human phenotypes are highly context-specific, varying across cell types and different …
human phenotypes are highly context-specific, varying across cell types and different …
A risk-reward examination of sample multiplexing reagents for single cell RNA-Seq
DV Brown, CJA Anttila, L Ling, P Grave, TM Baldwin… - Genomics, 2024 - Elsevier
Single-cell RNA sequencing (scRNA-Seq) has emerged as a powerful tool for
understanding cellular heterogeneity and function. However the choice of sample …
understanding cellular heterogeneity and function. However the choice of sample …
[HTML][HTML] Novel human pluripotent stem cell-derived hypothalamus organoids demonstrate cellular diversity
The hypothalamus is a region of the brain that plays an important role in regulating body
functions and behaviors. There is a growing interest in human pluripotent stem cells …
functions and behaviors. There is a growing interest in human pluripotent stem cells …
Evaluation of genetic demultiplexing of single-cell sequencing data from model species
JF Cardiello, AJ Araus, S Giatrellis… - Life Science …, 2023 - life-science-alliance.org
Single-cell sequencing (sc-seq) provides a species agnostic tool to study cellular processes.
However, these technologies are expensive and require sufficient cell quantities and …
However, these technologies are expensive and require sufficient cell quantities and …