Epigenetics, fragmentomics, and topology of cell-free DNA in liquid biopsies

YMD Lo, DSC Han, P Jiang, RWK Chiu - Science, 2021 - science.org
BACKGROUND Liquid biopsies that are based on analysis of cell-free DNA from plasma
offer diagnostic information that is otherwise accessible conventionally through invasive …

[HTML][HTML] The emerging role of cell-free DNA as a molecular marker for cancer management

AJ Bronkhorst, V Ungerer, S Holdenrieder - Biomolecular detection and …, 2019 - Elsevier
An increasing number of studies demonstrate the potential use of cell-free DNA (cfDNA) as a
surrogate marker for multiple indications in cancer, including diagnosis, prognosis, and …

The origin of highly elevated cell-free DNA in healthy individuals and patients with pancreatic, colorectal, lung, or ovarian cancer

AK Mattox, C Douville, Y Wang, M Popoli, J Ptak… - Cancer …, 2023 - aacrjournals.org
Cell-free DNA (cfDNA) concentrations from patients with cancer are often elevated
compared with those of healthy controls, but the sources of this extra cfDNA have never …

Liquid biopsies come of age: towards implementation of circulating tumour DNA

JCM Wan, C Massie, J Garcia-Corbacho… - Nature Reviews …, 2017 - nature.com
Improvements in genomic and molecular methods are expanding the range of potential
applications for circulating tumour DNA (ctDNA), both in a research setting and as a'liquid …

[HTML][HTML] How liquid biopsies can change clinical practice in oncology

G Siravegna, B Mussolin, T Venesio, S Marsoni… - Annals of …, 2019 - Elsevier
Cell-free DNA fragments are shed into the bloodstream by tumor cells. The analysis of
circulating tumor DNA (ctDNA), commonly known as liquid biopsy, can be exploited for a …

Plasma DNA end-motif profiling as a fragmentomic marker in cancer, pregnancy, and transplantation

P Jiang, K Sun, W Peng, SH Cheng, M Ni… - Cancer …, 2020 - aacrjournals.org
Plasma DNA fragmentomics is an emerging area of research covering plasma DNA sizes,
end points, and nucleosome footprints. In the present study, we found a significant increase …

Fragment length of circulating tumor DNA

HR Underhill, JO Kitzman, S Hellwig, NC Welker… - PLoS …, 2016 - journals.plos.org
Malignant tumors shed DNA into the circulation. The transient half-life of circulating tumor
DNA (ctDNA) may afford the opportunity to diagnose, monitor recurrence, and evaluate …

Liquid biopsies: donor-derived cell-free DNA for the detection of kidney allograft injury

M Oellerich, K Sherwood, P Keown, E Schütz… - Nature Reviews …, 2021 - nature.com
In kidney transplantation, the use of minimally invasive damage biomarkers that are more
sensitive and specific than plasma creatinine will be crucial to enable early, actionable …

Plasma DNA tissue map** by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments

K Sun, P Jiang, KCA Chan, J Wong, YKY Cheng… - Proceedings of the …, 2015 - pnas.org
Plasma consists of DNA released from multiple tissues within the body. Using genome-wide
bisulfite sequencing of plasma DNA and deconvolution of the sequencing data with …

A clinician's handbook for using ctDNA throughout the patient journey

SO Hasenleithner, MR Speicher - Molecular cancer, 2022 - Springer
Background The promise of precision cancer medicine presently centers around the
genomic sequence of a patient's tumor being translated into timely, actionable information to …