Sizing up metatranscriptomics
A typical marine bacterial cell in coastal seawater contains only∼ 200 molecules of mRNA,
each of which lasts only a few minutes before being degraded. Such a surprisingly small …
each of which lasts only a few minutes before being degraded. Such a surprisingly small …
Regulation of mRNA stability during bacterial stress responses
Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their
transcriptional and posttranscriptional machinery as a response. Under conditions that …
transcriptional and posttranscriptional machinery as a response. Under conditions that …
Production of oceanic nitrous oxide by ammonia-oxidizing archaea
The recent finding that microbial ammonia oxidation in the ocean is performed by archaea to
a greater extent than by bacteria has drastically changed the view on oceanic nitrification …
a greater extent than by bacteria has drastically changed the view on oceanic nitrification …
Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression
Abstract mRNA concentration depends on the balance between transcription and
degradation rates. On both sides of the equilibrium, synthesis and degradation show …
degradation rates. On both sides of the equilibrium, synthesis and degradation show …
Substrate uptake patterns shape niche separation in marine prokaryotic microbiome
Marine heterotrophic prokaryotes primarily take up ambient substrates using transporters.
The patterns of transporters targeting particular substrates shape the ecological role of …
The patterns of transporters targeting particular substrates shape the ecological role of …
Initiation of mRNA decay in bacteria
S Laalami, L Zig, H Putzer - Cellular and Molecular Life Sciences, 2014 - Springer
The instability of messenger RNA is fundamental to the control of gene expression. In
bacteria, mRNA degradation generally follows an “all-or-none” pattern. This implies that if …
bacteria, mRNA degradation generally follows an “all-or-none” pattern. This implies that if …
Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle
Background Growth of the ocean's most abundant primary producer, the cyanobacterium
Prochlorococcus, is tightly synchronized to the natural 24-hour light-dark cycle. We sought to …
Prochlorococcus, is tightly synchronized to the natural 24-hour light-dark cycle. We sought to …
One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy …
Aerobic methane-oxidizing bacteria (MOB) use a restricted substrate range, yet> 30 species-
equivalent operational taxonomical units (OTUs) are found in one paddy soil. How these …
equivalent operational taxonomical units (OTUs) are found in one paddy soil. How these …
Widespread antisense transcription in prokaryotes
Although bacterial genomes are usually densely protein-coding, genome-wide map**
approaches of transcriptional start sites revealed that a significant fraction of the identified …
approaches of transcriptional start sites revealed that a significant fraction of the identified …
Metaproteomics: a strategy to study the taxonomy and functionality of the gut microbiota
The gut microbiota is the largest and most complex microbial community in the human body.
Host-gut microbiota interactions have significant implications on health and disease. The …
Host-gut microbiota interactions have significant implications on health and disease. The …