Sizing up metatranscriptomics

MA Moran, B Satinsky, SM Gifford, H Luo… - The ISME …, 2013 - academic.oup.com
A typical marine bacterial cell in coastal seawater contains only∼ 200 molecules of mRNA,
each of which lasts only a few minutes before being degraded. Such a surprisingly small …

Regulation of mRNA stability during bacterial stress responses

DA Vargas-Blanco, SS Shell - Frontiers in microbiology, 2020 - frontiersin.org
Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their
transcriptional and posttranscriptional machinery as a response. Under conditions that …

Production of oceanic nitrous oxide by ammonia-oxidizing archaea

CR Löscher, A Kock, M Könneke, J LaRoche… - …, 2012 - bg.copernicus.org
The recent finding that microbial ammonia oxidation in the ocean is performed by archaea to
a greater extent than by bacteria has drastically changed the view on oceanic nitrification …

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression

JE Pérez-Ortín, P Alepuz, S Chávez… - Journal of molecular …, 2013 - Elsevier
Abstract mRNA concentration depends on the balance between transcription and
degradation rates. On both sides of the equilibrium, synthesis and degradation show …

Substrate uptake patterns shape niche separation in marine prokaryotic microbiome

Z Zhao, C Amano, T Reinthaler, MV Orellana… - Science …, 2024 - science.org
Marine heterotrophic prokaryotes primarily take up ambient substrates using transporters.
The patterns of transporters targeting particular substrates shape the ecological role of …

Initiation of mRNA decay in bacteria

S Laalami, L Zig, H Putzer - Cellular and Molecular Life Sciences, 2014 - Springer
The instability of messenger RNA is fundamental to the control of gene expression. In
bacteria, mRNA degradation generally follows an “all-or-none” pattern. This implies that if …

Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle

JR Waldbauer, S Rodrigue, ML Coleman… - 2012 - journals.plos.org
Background Growth of the ocean's most abundant primary producer, the cyanobacterium
Prochlorococcus, is tightly synchronized to the natural 24-hour light-dark cycle. We sought to …

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy …

A Reim, C Lüke, S Krause, J Pratscher… - The ISME …, 2012 - academic.oup.com
Aerobic methane-oxidizing bacteria (MOB) use a restricted substrate range, yet> 30 species-
equivalent operational taxonomical units (OTUs) are found in one paddy soil. How these …

Widespread antisense transcription in prokaryotes

J Georg, WR Hess - Microbiology Spectrum, 2018 - Am Soc Microbiol
Although bacterial genomes are usually densely protein-coding, genome-wide map**
approaches of transcriptional start sites revealed that a significant fraction of the identified …

Metaproteomics: a strategy to study the taxonomy and functionality of the gut microbiota

Y Wang, Y Zhou, X **ao, J Zheng, H Zhou - Journal of proteomics, 2020 - Elsevier
The gut microbiota is the largest and most complex microbial community in the human body.
Host-gut microbiota interactions have significant implications on health and disease. The …