Intragenomic rDNA variation-the product of concerted evolution, mutation, or something in between?

W Wang, X Zhang, S Garcia, AR Leitch, A Kovařík - Heredity, 2023 - nature.com
The classical model of concerted evolution states that hundreds to thousands of ribosomal
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …

Ribosomal ITS sequences and plant phylogenetic inference

I Álvarez, JF Wendel - Molecular phylogenetics and evolution, 2003 - Elsevier
One of the most popular sequences for phylogenetic inference at the generic and
infrageneric levels in plants is the internal transcribed spacer (ITS) region of the 18S–5.8 S …

Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species

JA Tate, BB Simpson - Systematic Botany, 2003 - BioOne
A molecular phylogenetic analysis of the Andean genus Tarasa (Malvaceae) and related
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …

Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)

PB Matheny, YJ Liu, JF Ammirati… - American Journal of …, 2002 - Wiley Online Library
An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II
gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit …

ITS2 is a double-edged tool for eukaryote evolutionary comparisons

AW Coleman - TRENDS in Genetics, 2003 - cell.com
The internal transcribed spacer (ITS) region of the nuclear rDNA cistrons is one of the more
frequently utilized regions for phylogenetic analyses at the genus and species levels. It has …

Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

GN Feliner, JA Rosselló - Molecular phylogenetics and evolution, 2007 - Elsevier
The internal transcribed spacers (ITS) of the nuclear ribosomal 18S–5.8 S–26S cistron
continue to be the most popular non-plastid region for species-level phylogenetic studies of …

Use of nuclear genes for phylogeny reconstruction in plants

RL Small, RC Cronn, JF Wendel - Australian Systematic Botany, 2004 - CSIRO Publishing
Molecular data have had a profound impact on the field of plant systematics, and the
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …

Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes

CD Bailey, TG Carr, SA Harris, CE Hughes - Molecular phylogenetics and …, 2003 - Elsevier
Many early reports of ITS region (ITS 1, 5.8 S, and ITS 2) variation in flowering plants
indicated that nrDNA arrays within individuals are homogeneous. However, both older and …

Toward a global phylogeny of the Brassicaceae

CD Bailey, MA Koch, M Mayer… - Molecular biology …, 2006 - academic.oup.com
The Brassicaceae is a large plant family (338 genera and 3,700 species) of major scientific
and economic importance. The taxonomy of this group has been plagued by convergent …

Systematics of Fagaceae: phylogenetic tests of reproductive trait evolution

PS Manos, ZK Zhou… - International Journal of …, 2001 - journals.uchicago.edu
The family Fagaceae includes nine currently recognized genera and ca. 1000 species,
making it one of the largest and most economically important groups within the order …