Interplay between chromatin marks in development and disease

SM Janssen, MC Lorincz - Nature Reviews Genetics, 2022 - nature.com
DNA methylation (DNAme) and histone post-translational modifications (PTMs) have
important roles in transcriptional regulation. Although many reports have characterized the …

Epigenetic control of CD8+ T cell differentiation

AN Henning, R Roychoudhuri, NP Restifo - Nature Reviews …, 2018 - nature.com
Upon stimulation, small numbers of naive CD8+ T cells proliferate and differentiate into a
variety of memory and effector cell types. CD8+ T cells can persist for years and kill tumour …

HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions

Y Huang, J An, S Sircar, C Bergis, CD Lopes… - Nature …, 2023 - nature.com
The complex and dynamic three-dimensional organization of chromatin within the nucleus
makes understanding the control of gene expression challenging, but also opens up …

Long‐lived macrophage reprogramming drives spike protein‐mediated inflammasome activation in COVID‐19

SJ Theobald, A Simonis, T Georgomanolis… - EMBO molecular …, 2021 - embopress.org
Innate immunity triggers responsible for viral control or hyperinflammation in COVID‐19 are
largely unknown. Here we show that the SARS‐CoV‐2 spike protein (S‐protein) primes …

[HTML][HTML] Transcription factor protein interactomes reveal genetic determinants in heart disease

B Gonzalez-Teran, M Pittman, F Felix, R Thomas… - Cell, 2022 - cell.com
Congenital heart disease (CHD) is present in 1% of live births, yet identification of causal
mutations remains challenging. We hypothesized that genetic determinants for CHDs may …

Epigenetic regulation in AKI and kidney repair: mechanisms and therapeutic implications

C Guo, G Dong, X Liang, Z Dong - Nature Reviews Nephrology, 2019 - nature.com
Acute kidney injury (AKI) is a major public health concern associated with high morbidity and
mortality. Despite decades of research, the pathogenesis of AKI remains incompletely …

Regulatory activity is the default DNA state in eukaryotes

I Luthra, C Jensen, XE Chen, AL Salaudeen… - Nature Structural & …, 2024 - nature.com
Genomes encode for genes and non-coding DNA, both capable of transcriptional activity.
However, unlike canonical genes, many transcripts from non-coding DNA have limited …

Mesenchymal stem cells under epigenetic control–the role of epigenetic machinery in fate decision and functional properties

A Walewska, A Janucik, M Tynecka, M Moniuszko… - Cell Death & …, 2023 - nature.com
Mesenchymal stem cells (mesenchymal stromal cells, MSC) are multipotent stem cells that
can differentiate into cells of at least three mesodermal lineages, namely adipocytes …

Genetic sources of population epigenomic variation

A Taudt, M Colomé-Tatché, F Johannes - Nature Reviews Genetics, 2016 - nature.com
The field of epigenomics has rapidly progressed from the study of individual reference
epigenomes to surveying epigenomic variation in populations. Recent studies in a number …

HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression

S Srinivasachar Badarinarayan… - Nucleic Acids …, 2020 - academic.oup.com
Although endogenous retroviruses (ERVs) are known to harbor cis-regulatory elements,
their role in modulating cellular immune responses remains poorly understood. Using an …