Conservation of biodiversity in the genomics era

MA Supple, B Shapiro - Genome biology, 2018 - Springer
Abstract “Conservation genomics” encompasses the idea that genome-scale data will
improve the capacity of resource managers to protect species. Although genetic approaches …

A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life

PM Hime, AR Lemmon, ECM Lemmon… - Systematic …, 2021 - academic.oup.com
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …

A chromosome-scale assembly of the axolotl genome

JJ Smith, N Timoshevskaya, VA Timoshevskiy… - Genome …, 2019 - genome.cshlp.org
The axolotl (Ambystoma mexicanum) provides critical models for studying regeneration,
evolution, and development. However, its large genome (∼ 32 Gb) presents a formidable …

Population genomics: advancing understanding of nature

G Luikart, M Kardos, BK Hand, OP Rajora… - Population genomics …, 2019 - Springer
Population genomics is advancing our understanding of evolution, ecology, conservation,
agriculture, forestry, and human health by allowing new and long-standing questions to be …

[HTML][HTML] Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle

B Wielstra, E McCartney-Melstad, JW Arntzen… - Molecular Phylogenetics …, 2019 - Elsevier
Newts of the genus Triturus (marbled and crested newts) exhibit substantial variation in the
number of trunk vertebrae (NTV) and a higher NTV corresponds to a longer annual aquatic …

Population genomics provides key insights in ecology and evolution

PA Hohenlohe, BK Hand, KR Andrews… - Population genomics …, 2019 - Springer
Population genomic tools have revolutionized many aspects of biology, as detailed
throughout the chapters of this volume. In particular, population genomics has provided key …

[HTML][HTML] Anchored hybrid enrichment generated nuclear, plastid and mitochondrial markers resolve the Lepanthes horrida (Orchidaceae: Pleurothallidinae) species …

D Bogarín, OA Pérez-Escobar, D Groenenberg… - Molecular Phylogenetics …, 2018 - Elsevier
Phylogenetic relationships in species complexes and lineages derived from rapid
diversifications are often challenging to resolve using morphology or standard DNA …

Spatial genetic structure in European marbled newts revealed with target enrichment by sequence capture

C Kazilas, C Dufresnes, J France, K Kalaentzis… - Molecular Phylogenetics …, 2024 - Elsevier
European marbled newts come in two species that have abutting ranges. The northern
species, Triturus marmoratus, is found in France and the northern part of the Iberian …