Mechanisms of assembly and remodelling of the extracellular matrix
A Naba - Nature Reviews Molecular Cell Biology, 2024 - nature.com
The extracellular matrix (ECM) is the complex meshwork of proteins and glycans that forms
the scaffold that surrounds and supports cells. It exerts key roles in all aspects of metazoan …
the scaffold that surrounds and supports cells. It exerts key roles in all aspects of metazoan …
Recent advances in computational algorithms and software for large-scale glycoproteomics
Glycoproteomics, or characterizing glycosylation events at a proteome scale, has seen rapid
advances in methods for analyzing glycopeptides by tandem mass spectrometry in recent …
advances in methods for analyzing glycopeptides by tandem mass spectrometry in recent …
An introduction to mass spectrometry-based proteomics
SR Shuken - Journal of Proteome Research, 2023 - ACS Publications
Mass spectrometry is unmatched in its versatility for studying practically any aspect of the
proteome. Because the foundations of mass spectrometry-based proteomics are complex …
proteome. Because the foundations of mass spectrometry-based proteomics are complex …
Direct observation of glycans bonded to proteins and lipids at the single-molecule level
Proteins and lipids decorated with glycans are found throughout biological entities, playing
roles in biological functions and dysfunctions. Current analytical strategies for these glycan …
roles in biological functions and dysfunctions. Current analytical strategies for these glycan …
Analysis and visualization of quantitative proteomics data using FragPipe-Analyst
The FragPipe computational proteomics platform is gaining widespread popularity among
the proteomics research community because of its fast processing speed and user-friendly …
the proteomics research community because of its fast processing speed and user-friendly …
Glycopeptide database search and de novo sequencing with PEAKS GlycanFinder enable highly sensitive glycoproteomics
Here we present GlycanFinder, a database search and de novo sequencing tool for the
analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates …
analysis of intact glycopeptides from mass spectrometry data. GlycanFinder integrates …
[HTML][HTML] Roles of glycosylation at the cancer cell surface: opportunities for large scale glycoproteomics
Cell surface glycosylation has a variety of functions, and its dysregulation in cancer
contributes to impaired signaling, metastasis and the evasion of the immune responses …
contributes to impaired signaling, metastasis and the evasion of the immune responses …
Critical considerations in N-glycoproteomics
N-Glycoproteomics, the system-wide study of glycans asparagine-linked to protein carriers,
holds a unique and still largely untapped potential to provide deep insights into the …
holds a unique and still largely untapped potential to provide deep insights into the …
Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE
Mucin-domain glycoproteins are densely O-glycosylated and play critical roles in a host of
biological functions. In particular, the T cell immunoglobulin and mucin-domain containing …
biological functions. In particular, the T cell immunoglobulin and mucin-domain containing …
Restoring protein glycosylation with GlycoShape
Despite ground-breaking innovations in experimental structural biology and protein structure
prediction techniques, capturing the structure of the glycans that functionalize proteins …
prediction techniques, capturing the structure of the glycans that functionalize proteins …