Medicinal chemistry and bioinformatics-current trends in drugs discovery with networks topological indices

H Gonzalez-Diaz, S Vilar, L Santana… - Current topics in …, 2007 - ingentaconnect.com
The numerical encoding of chemical structure with Topological Indices (TIs) is currently
growing in importance in Medicinal Chemistry and Bioinformatics. This approach allows the …

Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach

H González-Díaz, F Prado-Prado… - Current topics in …, 2008 - ingentaconnect.com
The method MARCH-INSIDE (MARkovian CHemicals IN SIlico DEsign) is a simple but
efficient computational approach to the study of Quantitative Structure-Activity Relationships …

Is it reliable to use common molecular docking methods for comparing the binding affinities of enantiomer pairs for their protein target?

D Ramírez, J Caballero - International journal of molecular sciences, 2016 - mdpi.com
Molecular docking is a computational chemistry method which has become essential for the
rational drug design process. In this context, it has had great impact as a successful tool for …

Multi-target spectral moment QSAR versus ANN for antiparasitic drugs against different parasite species

FJ Prado-Prado, X García-Mera… - Bioorganic & medicinal …, 2010 - Elsevier
There are many of pathogen parasite species with different susceptibility profile to
antiparasitic drugs. Unfortunately, almost QSAR models predict the biological activity of …

Linear indices of the “molecular pseudograph's atom adjacency matrix”: definition, significance-interpretation, and application to QSAR analysis of flavone derivatives …

Y Marrero-Ponce - Journal of chemical information and computer …, 2004 - ACS Publications
This report describes a new set of molecular descriptors of relevance to QSAR/QSPR
studies and drug design, atom linear indices fk (xi). These atomic level chemical descriptors …

Using Topological Indices to Predict Anti-Alzheimer and Anti-Parasitic GSK-3 Inhibitors by Multi-Target QSAR in Silico Screening

I García, Y Fall, G Gómez - Molecules, 2010 - mdpi.com
Plasmodium falciparum, Leishmania, Trypanosomes, are the causers of diseases such as
malaria, leishmaniasis and African trypanosomiasis that nowadays are the most serious …

Atom, atom-type, and total linear indices of the “molecular pseudograph's atom adjacency matrix”: application to QSPR/QSAR studies of organic compounds

YM Ponce, JAC Garit, F Torrens, VR Zaldivar… - Molecules, 2004 - mdpi.com
In this paper we describe the application in QSPR/QSAR studies of a new group of
molecular descriptors: atom, atom-type and total linear indices of the molecular …

TOMOCOMD-CARDD descriptors-based virtual screening of tyrosinase inhibitors: evaluation of different classification model combinations using bond-based linear …

GM Casañola-Martín, Y Marrero-Ponce… - Bioorganic & medicinal …, 2007 - Elsevier
A new set of bond-level molecular descriptors (bond-based linear indices) are used here in
QSAR (quantitative structure–activity relationship) studies of tyrosinase inhibitors, for finding …

Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices

CR Munteanu, AL Magalhães, E Uriarte… - Journal of theoretical …, 2009 - Elsevier
The cancer diagnostic is a complex process and, sometimes, the specific markers can
interfere or produce negative results. Thus, new simple and fast theoretical models are …

Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps

Y Marrero-Ponce, M Iyarreta-Veitía… - Journal of chemical …, 2005 - ACS Publications
Malaria has been one of the most significant public health problems for centuries. It affects
many tropical and subtropical regions of the world. The increasing resistance of Plasmodium …