[HTML][HTML] Enter the matrix: factorization uncovers knowledge from omics

GL Stein-O'Brien, R Arora, AC Culhane, AV Favorov… - Trends in Genetics, 2018 - cell.com
Omics data contain signals from the molecular, physical, and kinetic inter-and intracellular
interactions that control biological systems. Matrix factorization (MF) techniques can reveal …

The rise of nonnegative matrix factorization: Algorithms and applications

YT Guo, QQ Li, CS Liang - Information Systems, 2024 - Elsevier
Although nonnegative matrix factorization (NMF) is widely used, some matrix factorization
methods result in misleading results and waste of computing resources due to lack of timely …

Biclustering data analysis: a comprehensive survey

EN Castanho, H Aidos, SC Madeira - Briefings in Bioinformatics, 2024 - academic.oup.com
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …

MapReduce and its applications, challenges, and architecture: a comprehensive review and directions for future research

SN Khezr, NJ Navimipour - Journal of Grid Computing, 2017 - Springer
Profound attention to MapReduce framework has been caught by many different areas. It is
presently a practical model for data-intensive applications due to its simple interface of …

Matrix factorizations at scale: A comparison of scientific data analytics in Spark and C+ MPI using three case studies

A Gittens, A Devarakonda, E Racah… - … Conference on Big …, 2016 - ieeexplore.ieee.org
We explore the trade-offs of performing linear algebra using Apache Spark, compared to
traditional C and MPI implementations on HPC platforms. Spark is designed for data …

A high-performance parallel algorithm for nonnegative matrix factorization

R Kannan, G Ballard, H Park - ACM SIGPLAN Notices, 2016 - dl.acm.org
Non-negative matrix factorization (NMF) is the problem of determining two non-negative low
rank factors W and H, for the given input matrix A, such that A≈ WH. NMF is a useful tool for …

Analysis of high-dimensional genomic data using MapReduce based probabilistic neural network

SK Baliarsingh, S Vipsita, AH Gandomi, A Panda… - Computer methods and …, 2020 - Elsevier
Background: The size of genomics data has been growing rapidly over the last decade.
However, the conventional data analysis techniques are incapable of processing this huge …

Large scale optimization to minimize network traffic using MapReduce in big data applications

S Neelakandan, S Divyabharathi… - … on Computation of …, 2016 - ieeexplore.ieee.org
The Map-Reduce model simplifies the large scale data handling on commodities group by
abusing parallel map & reduces assignments.. The use of this model is beneficial only when …

MPI-FAUN: An MPI-based framework for alternating-updating nonnegative matrix factorization

R Kannan, G Ballard, H Park - IEEE Transactions on …, 2017 - ieeexplore.ieee.org
Non-negative matrix factorization (NMF) is the problem of determining two non-negative low
rank factors Wand H, for the given input matrix A, such that A WH. NMF is a useful tool for …

Map-reduce based distance weighted k-nearest neighbor machine learning algorithm for big data applications

E Gothai, V Muthukumaran, K Valarmathi… - … Computing: Practice and …, 2022 - scpe.org
With the evolution of Internet standards and advancements in various Internet and mobile
technologies, especially since web 4.0, more and more web and mobile applications …