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Metatranscriptomics for the human microbiome and microbial community functional profiling
Shotgun metatranscriptomics (MTX) is an increasingly practical way to survey microbial
community gene function and regulation at scale. This review begins by summarizing the …
community gene function and regulation at scale. This review begins by summarizing the …
Evolutionary ecology, taxonomy, and systematics of avian malaria and related parasites
Haemosporidian parasites of the genera Plasmodium, Leucocytozoon, and Haemoproteus
are one of the most prevalent and widely studied groups of parasites infecting birds …
are one of the most prevalent and widely studied groups of parasites infecting birds …
Contrasting drivers of diversity in hosts and parasites across the tropical Andes
Geographic turnover in community composition is created and maintained by eco-
evolutionary forces that limit the ranges of species. One such force may be antagonistic …
evolutionary forces that limit the ranges of species. One such force may be antagonistic …
[HTML][HTML] Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples
We developed a metatranscriptomics method that can simultaneously capture the
respiratory virome, microbiome, and host response directly from low biomass samples …
respiratory virome, microbiome, and host response directly from low biomass samples …
Elevational niche-shift migration: Why the degree of elevational change matters for the ecology, evolution, and physiology of migratory birds
Elevational migration can be defined as roundtrip seasonal movement that involves upward
and downward shifts in elevation. These shifts incur physiological challenges that are …
and downward shifts in elevation. These shifts incur physiological challenges that are …
Geographic and host distribution of haemosporidian parasite lineages from birds of the family Turdidae
J Harl, T Himmel, G Valkiūnas, M Ilgūnas, T Bakonyi… - Malaria Journal, 2020 - Springer
Abstract Background Haemosporidians (Apicomplexa, Protista) are obligate heteroxenous
parasites of vertebrates and blood-sucking dipteran insects. Avian haemosporidians …
parasites of vertebrates and blood-sucking dipteran insects. Avian haemosporidians …
[HTML][HTML] Seasonal dynamics of haemosporidian (Apicomplexa, Haemosporida) parasites in house sparrows Passer domesticus at four European sites: comparison …
Infectious diseases often vary seasonally in a predictable manner, and seasonality may be
responsible for geographical differences in prevalence. In temperate regions, vector-borne …
responsible for geographical differences in prevalence. In temperate regions, vector-borne …
Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia
Background Wildlife species carry a remarkable diversity of trypanosomes. The detection of
trypanosome infection in native Australian fauna is central to understanding their diversity …
trypanosome infection in native Australian fauna is central to understanding their diversity …
Evolution of vector transmitted parasites by host switching revealed through sequencing of Haemoproteus parasite mitochondrial genomes
Parasite species evolve by switching to new hosts, cospeciating with their current hosts, or
speciating on their current hosts. Vector transmitted parasites are expected to speciate by …
speciating on their current hosts. Vector transmitted parasites are expected to speciate by …
Genomic sequence capture of Plasmodium relictum in experimentally infected birds
Background Sequencing parasite genomes in the presence of host DNA is challenging.
Sequence capture can overcome this problem by using RNA probes that hybridize with the …
Sequence capture can overcome this problem by using RNA probes that hybridize with the …