Metatranscriptomics for the human microbiome and microbial community functional profiling

Y Zhang, KN Thompson, T Branck, Y Yan… - Annual Review of …, 2021 - annualreviews.org
Shotgun metatranscriptomics (MTX) is an increasingly practical way to survey microbial
community gene function and regulation at scale. This review begins by summarizing the …

Evolutionary ecology, taxonomy, and systematics of avian malaria and related parasites

A Fecchio, CRF Chagas, JA Bell, K Kirchgatter - Acta Tropica, 2020 - Elsevier
Haemosporidian parasites of the genera Plasmodium, Leucocytozoon, and Haemoproteus
are one of the most prevalent and widely studied groups of parasites infecting birds …

Contrasting drivers of diversity in hosts and parasites across the tropical Andes

SM McNew, LN Barrow, JL Williamson… - Proceedings of the …, 2021 - pnas.org
Geographic turnover in community composition is created and maintained by eco-
evolutionary forces that limit the ranges of species. One such force may be antagonistic …

[HTML][HTML] Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples

SV Rajagopala, NG Bakhoum, SB Pakala, MH Shilts… - Cell reports …, 2021 - cell.com
We developed a metatranscriptomics method that can simultaneously capture the
respiratory virome, microbiome, and host response directly from low biomass samples …

Elevational niche-shift migration: Why the degree of elevational change matters for the ecology, evolution, and physiology of migratory birds

JL Williamson, CC Witt - The Auk, 2021 - academic.oup.com
Elevational migration can be defined as roundtrip seasonal movement that involves upward
and downward shifts in elevation. These shifts incur physiological challenges that are …

Geographic and host distribution of haemosporidian parasite lineages from birds of the family Turdidae

J Harl, T Himmel, G Valkiūnas, M Ilgūnas, T Bakonyi… - Malaria Journal, 2020 - Springer
Abstract Background Haemosporidians (Apicomplexa, Protista) are obligate heteroxenous
parasites of vertebrates and blood-sucking dipteran insects. Avian haemosporidians …

[HTML][HTML] Seasonal dynamics of haemosporidian (Apicomplexa, Haemosporida) parasites in house sparrows Passer domesticus at four European sites: comparison …

JM Neto, S Mellinger, L Halupka, A Marzal… - International Journal for …, 2020 - Elsevier
Infectious diseases often vary seasonally in a predictable manner, and seasonality may be
responsible for geographical differences in prevalence. In temperate regions, vector-borne …

Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia

AS Ortiz-Baez, K Cousins, JS Eden, WS Chang… - Parasites & …, 2020 - Springer
Background Wildlife species carry a remarkable diversity of trypanosomes. The detection of
trypanosome infection in native Australian fauna is central to understanding their diversity …

Evolution of vector transmitted parasites by host switching revealed through sequencing of Haemoproteus parasite mitochondrial genomes

A Ciloglu, VA Ellis, M Duc, PA Downing, A Inci… - Molecular Phylogenetics …, 2020 - Elsevier
Parasite species evolve by switching to new hosts, cospeciating with their current hosts, or
speciating on their current hosts. Vector transmitted parasites are expected to speciate by …

Genomic sequence capture of Plasmodium relictum in experimentally infected birds

VA Ellis, V Kalbskopf, A Ciloglu, M Duc, X Huang… - Parasites & …, 2022 - Springer
Background Sequencing parasite genomes in the presence of host DNA is challenging.
Sequence capture can overcome this problem by using RNA probes that hybridize with the …