Uniform manifold approximation and projection

J Healy, L McInnes - Nature Reviews Methods Primers, 2024 - nature.com
Uniform manifold approximation and projection is a nonlinear dimension reduction method
often used for visualizing data and as pre-processing for further machine-learning tasks …

ARC–MOF: a diverse database of metal-organic frameworks with DFT-derived partial atomic charges and descriptors for machine learning

J Burner, J Luo, A White, A Mirmiran, O Kwon… - Chemistry of …, 2023 - ACS Publications
Metal–organic frameworks (MOFs) are a class of crystalline materials composed of metal
nodes or clusters connected via semi-rigid organic linkers. Owing to their high-surface area …

The oncogenic fusion protein DNAJB1-PRKACA can be specifically targeted by peptide-based immunotherapy in fibrolamellar hepatocellular carcinoma

J Bauer, N Köhler, Y Maringer, P Bucher… - Nature …, 2022 - nature.com
The DNAJB1-PRKACA fusion transcript is the oncogenic driver in fibrolamellar
hepatocellular carcinoma, a lethal disease lacking specific therapies. This study reports on …

Non-linear dimensionality reduction on extracellular waveforms reveals cell type diversity in premotor cortex

EK Lee, H Balasubramanian, A Tsolias, SU Anakwe… - Elife, 2021 - elifesciences.org
Cortical circuits are thought to contain a large number of cell types that coordinate to
produce behavior. Current in vivo methods rely on clustering of specified features of …

Cagra: Highly parallel graph construction and approximate nearest neighbor search for gpus

H Ootomo, A Naruse, C Nolet, R Wang… - 2024 IEEE 40th …, 2024 - ieeexplore.ieee.org
Approximate Nearest Neighbor Search (ANNS) plays a critical role in various disciplines
spanning data mining and artificial intelligence, from information retrieval and computer …

Global and local structure preserving GPU t-SNE methods for large-scale applications

BH Meyer, ATR Pozo, WMN Zola - Expert Systems with Applications, 2022 - Elsevier
Currently, the use of dimensionality reduction techniques such as t-distributed stochastic
neighbor embedding (t-SNE) to visualize data has become essential in dealing with large …

Immune surveillance of acute myeloid leukemia is mediated by HLA-presented antigens on leukemia progenitor cells

A Nelde, H Schuster, JS Heitmann, J Bauer… - Blood Cancer …, 2023 - AACR
Therapy-resistant leukemia stem and progenitor cells (LSC) are a main cause of acute
myeloid leukemia (AML) relapse. LSC-targeting therapies may thus improve outcome of …

Holographic Global Convolutional Networks for Long-Range Prediction Tasks in Malware Detection

MM Alam, E Raff, SR Biderman… - International …, 2024 - proceedings.mlr.press
Malware detection is an interesting and valuable domain to work in because it has
significant real-world impact and unique machine-learning challenges. We investigate …

Intraoperative assessment of tumor margins in tissue sections with hyperspectral imaging and machine learning

D Pertzborn, HN Nguyen, K Hüttmann, J Prengel… - Cancers, 2022 - mdpi.com
Simple Summary The complete resection of the malignant tumor during surgery is crucial for
the patient's survival. To date, surgeons have been intraoperatively supported by information …

Building interpretable predictive models with context-aware evolutionary learning

B Tran, C Sudusinghe, S Nguyen, D Alahakoon - Applied Soft Computing, 2023 - Elsevier
Building prediction models with the right balance between performance and interpretability
is currently a great challenge in machine learning. A large number of recent studies have …