Analytical methods in untargeted metabolomics: state of the art in 2015

A Alonso, S Marsal, A Julià - Frontiers in bioengineering and …, 2015 - frontiersin.org
Metabolomics comprises the methods and techniques that are used to measure the small
molecule composition of biofluids and tissues, and is actually one of the most rapidly …

Analytical opportunities and challenges for data handling with chemometrics strategies from LC-MS based food metabolomics

Z Qin, J Wang, D Wang, H **ao, X Lv, H Chen… - Trends in Food Science & …, 2024 - Elsevier
Background Liquid chromatography-mass spectrometry-based metabolomics allows us to
measure thousands of small metabolites from food matrixes, focused on understanding in …

Navigating freely-available software tools for metabolomics analysis

R Spicer, RM Salek, P Moreno, D Cañueto… - Metabolomics, 2017 - Springer
Introduction The field of metabolomics has expanded greatly over the past two decades,
both as an experimental science with applications in many areas, as well as in regards to …

[HTML][HTML] An assessment of quality assurance/quality control efforts in high resolution mass spectrometry non-target workflows for analysis of environmental samples

B Schulze, Y Jeon, S Kaserzon, AL Heffernan… - TrAC Trends in …, 2020 - Elsevier
The application of non-target analysis (NTA), a comprehensive approach to characterize
unknown chemicals, including chemicals of emerging concern has seen a steady increase …

Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests

FA Castelli, G Rosati, C Moguet, C Fuentes… - Analytical and …, 2022 - Springer
Metabolomics refers to the large-scale detection, quantification, and analysis of small
molecules (metabolites) in biological media. Although metabolomics, alone or combined …

Detailed investigation and comparison of the XCMS and MZmine 2 chromatogram construction and chromatographic peak detection methods for preprocessing mass …

OD Myers, SJ Sumner, S Li, S Barnes, X Du - Analytical Chemistry, 2017 - ACS Publications
XCMS and MZmine 2 are two widely used software packages for preprocessing untargeted
LC/MS metabolomics data. Both construct extracted ion chromatograms (EICs) and detect …

[HTML][HTML] Perspective: dietary biomarkers of intake and exposure—exploration with omics approaches

P Maruvada, JW Lampe, DS Wishart, D Barupal… - Advances in …, 2020 - Elsevier
While conventional nutrition research has yielded biomarkers such as doubly labeled water
for energy metabolism and 24-h urinary nitrogen for protein intake, a critical need exists for …

Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection

Z Li, Y Lu, Y Guo, H Cao, Q Wang, W Shui - Analytica chimica acta, 2018 - Elsevier
Data analysis represents a key challenge for untargeted metabolomics studies and it
commonly requires extensive processing of more than thousands of metabolite peaks …

Comparison of software tools for liquid chromatography–high-resolution mass spectrometry data processing in nontarget screening of environmental samples

LL Hohrenk, F Itzel, N Baetz, J Tuerk… - Analytical …, 2019 - ACS Publications
The field of high-resolution mass spectrometry has undergone a rapid progress in the last
years due to instrumental improvements leading to a higher sensitivity and selectivity of …

Deep neural networks for classification of LC-MS spectral peaks

ED Kantz, S Tiwari, JD Watrous, S Cheng… - Analytical …, 2019 - ACS Publications
Liquid chromatography–mass spectrometry (LC-MS)-based metabolomics has emerged as
a valuable tool for biological discovery, capable of assaying thousands of diverse chemical …