Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Environmental DNA metabarcoding: A novel method for biodiversity monitoring of marine fish communities

M Miya - Annual Review of Marine Science, 2022 - annualreviews.org
Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It
has received increased attention as an indirect marker for biodiversity monitoring. This …

Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment

F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …

MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples

M Miya, RO Gotoh, T Sado - Fisheries Science, 2020 - Springer
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …

A systematic review of mangrove restoration studies in Southeast Asia: Challenges and opportunities for the United Nation's Decade on Ecosystem Restoration

MEB Gerona-Daga, SG Salmo III - Frontiers in Marine Science, 2022 - frontiersin.org
Mangroves provide valuable ecological and socio-economic services. The importance of
mangroves is particularly evident in Southeast (SE) Asia where the most extensive and …

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot

T Valdivia‐Carrillo, A Rocha‐Olivares… - Molecular Ecology …, 2021 - Wiley Online Library
Marine biodiversity can be surveyed using underwater visual censuses and recently with
eDNA metabarcoding. Although a promising tool, eDNA studies have shown contrasting …

Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods

J Hallam, EL Clare, JI Jones, JJ Day - Environmental DNA, 2021 - Wiley Online Library
While many studies have considered the ability of eDNA to assess animal communities in
lacustrine settings, fewer have considered riverine systems, particularly those spanning the …

Combining environmental DNA and visual surveys can inform conservation planning for coral reefs

D Muenzel, A Bani, M De Brauwer, E Stewart… - Proceedings of the …, 2024 - pnas.org
Environmental DNA (eDNA) metabarcoding has the potential to revolutionize conservation
planning by providing spatially and taxonomically comprehensive data on biodiversity and …

An overview of ecological indicators of fish to evaluate the anthropogenic pressures in aquatic ecosystems: from traditional to innovative DNA-based approaches

M Pinna, F Zangaro, B Saccomanno, C Scalone… - Water, 2023 - mdpi.com
In order to halt the loss of global biodiversity and considering the United Nations Decade for
Ocean Conservation Agenda, increasing efforts to improve biomonitoring programs and …

[HTML][HTML] Comparison of environmental DNA metabarcoding and bottom trawling for detecting seasonal fish communities and habitat preference in a highly disturbed …

P Jiang, S Zhang, S Xu, P **ong, Y Cao, Z Chen… - Ecological Indicators, 2023 - Elsevier
Environmental DNA (eDNA) metabarcoding has been used to study fish diversity in various
aquatic ecosystems. However, studies on fish community structure in estuarine ecosystems …