A review on machine learning principles for multi-view biological data integration

Y Li, FX Wu, A Ngom - Briefings in bioinformatics, 2018 - academic.oup.com
Driven by high-throughput sequencing techniques, modern genomic and clinical studies are
in a strong need of integrative machine learning models for better use of vast volumes of …

[HTML][HTML] Machine learning in the prediction of cancer therapy

R Rafique, SMR Islam, JU Kazi - Computational and Structural …, 2021 - Elsevier
Resistance to therapy remains a major cause of cancer treatment failures, resulting in many
cancer-related deaths. Resistance can occur at any time during the treatment, even at the …

Deep-Resp-Forest: a deep forest model to predict anti-cancer drug response

R Su, X Liu, L Wei, Q Zou - Methods, 2019 - Elsevier
The identification of therapeutic biomarkers predictive of drug response is crucial in
personalized medicine. A number of computational models to predict response of anti …

DeepTTA: a transformer-based model for predicting cancer drug response

L Jiang, C Jiang, X Yu, R Fu, S **… - Briefings in …, 2022 - academic.oup.com
Identifying new lead molecules to treat cancer requires more than a decade of dedicated
effort. Before selected drug candidates are used in the clinic, their anti-cancer activity is …

Improving prediction of phenotypic drug response on cancer cell lines using deep convolutional network

P Liu, H Li, S Li, KS Leung - BMC bioinformatics, 2019 - Springer
Background Understanding the phenotypic drug response on cancer cell lines plays a vital
role in anti-cancer drug discovery and re-purposing. The Genomics of Drug Sensitivity in …

A multiple kernel learning algorithm for drug-target interaction prediction

ACA Nascimento, RBC Prudêncio, IG Costa - BMC bioinformatics, 2016 - Springer
Background Drug-target networks are receiving a lot of attention in late years, given its
relevance for pharmaceutical innovation and drug lead discovery. Different in silico …

DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines

M Li, Y Wang, R Zheng, X Shi, Y Li… - … /ACM transactions on …, 2019 - ieeexplore.ieee.org
High-throughput screening technologies have provided a large amount of drug sensitivity
data for a panel of cancer cell lines and hundreds of compounds. Computational …

A novel heterogeneous network-based method for drug response prediction in cancer cell lines

F Zhang, M Wang, J **, J Yang, A Li - Scientific reports, 2018 - nature.com
An enduring challenge in personalized medicine lies in selecting a suitable drug for each
individual patient. Here we concentrate on predicting drug responses based on a cohort of …

Predicting synergism of cancer drug combinations using NCI-ALMANAC data

P Sidorov, S Naulaerts, J Ariey-Bonnet… - Frontiers in …, 2019 - frontiersin.org
Drug combinations are of great interest for cancer treatment. Unfortunately, the discovery of
synergistic combinations by purely experimental means is only feasible on small sets of …

Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization

L Wang, X Li, L Zhang, Q Gao - BMC cancer, 2017 - Springer
Background Human cancer cell lines are used in research to study the biology of cancer and
to test cancer treatments. Recently there are already some large panels of several hundred …