Cross-modality map** using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections

KM Stouffer, A Trouvé, L Younes, M Kunst, L Ng… - Nature …, 2024 - nature.com
This paper explicates a solution to building correspondences between molecular-scale
transcriptomics and tissue-scale atlases. This problem arises in atlas construction and cross …

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Y Ben-Simon, M Hooper, S Narayan, T Daigle… - …, 2024 - pmc.ncbi.nlm.nih.gov
The mammalian cortex is comprised of cells classified into types according to shared
properties. Defining the contribution of each cell type to the processes guided by the cortex …

DeMBA: a developmental atlas for navigating the mouse brain in space and time

H Carey, H Kleven, M Øvsthus, SC Yates, G Csucs… - bioRxiv, 2024 - biorxiv.org
Studies of the adult mouse brain have benefited from three-dimensional (3D) atlases
providing standardised frameworks for data analysis and integration. However, few 3D …

Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice

SB Manjila, S Son, H Kline, R Betty, Y Wu, P Hyun-Jae… - bioRxiv, 2024 - biorxiv.org
The dorsal endopiriform nucleus (EPd) is an enigmatic cortical subplate structure located
inside the piriform cortex that shares a similar developmental origin with the claustrum …