Fluorescence in situ hybridization in plants: recent developments and future applications

J Jiang - Chromosome Research, 2019 - Springer
Fluorescence in situ hybridization (FISH) was developed more than 30 years ago and has
been the most paradigm-changing technique in cytogenetic research. FISH has been used …

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

JN Timmis, MA Ayliffe, CY Huang, W Martin - Nature reviews genetics, 2004 - nature.com
Genome sequences reveal that a deluge of DNA from organelles has constantly been
bombarding the nucleus since the origin of organelles. Recent experiments have shown that …

Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants

P Schläpfer, P Zhang, C Wang, T Kim, M Banf… - Plant …, 2017 - academic.oup.com
Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

[HTML][HTML] A near-complete assembly of an Arabidopsis thaliana genome

X Hou, D Wang, Z Cheng, Y Wang, Y Jiao - Molecular plant, 2022 - cell.com
The genome sequence of Arabidopsis thaliana, a widely adopted model species, has
greatly expedited plant molecular biology research. Over 20 years after the first release of …

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

F Denoeud, L Carretero-Paulet, A Dereeper, G Droc… - science, 2014 - science.org
Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating
effects of caffeine. We generated a high-quality draft genome of the species Coffea …

The plant mitochondrial genome: dynamics and maintenance

JM Gualberto, D Mileshina, C Wallet, AK Niazi… - Biochimie, 2014 - Elsevier
Plant mitochondria have a complex and peculiar genetic system. They have the largest
genomes, as compared to organelles from other eukaryotic organisms. These can expand …

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

E Hazkani-Covo, RM Zeller, W Martin - PLoS genetics, 2010 - journals.plos.org
The natural transfer of DNA from mitochondria to the nucleus generates nuclear copies of
mitochondrial DNA (numts) and is an ongoing evolutionary process, as genome sequences …

Cytonuclear integration and co-evolution

DB Sloan, JM Warren, AM Williams, Z Wu… - Nature Reviews …, 2018 - nature.com
The partitioning of genetic material between the nucleus and cytoplasmic (mitochondrial and
plastid) genomes within eukaryotic cells necessitates coordinated integration between these …

Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress in Arabidopsis

A Pecinka, HQ Dinh, T Baubec, M Rosa… - The Plant …, 2010 - academic.oup.com
Epigenetic factors determine responses to internal and external stimuli in eukaryotic
organisms. Whether and how environmental conditions feed back to the epigenetic …

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

Y Notsu, S Masood, T Nishikawa, N Kubo… - Molecular genetics and …, 2002 - Springer
The entire mitochondrial genome of rice (Oryza sativa L.), a monocot plant, has been
sequenced. It was found to comprise 490,520 bp, with an average G+ C content of 43.8 …