Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects

KC Beng, RT Corlett - Biodiversity and conservation, 2020 - Springer
Conserving biodiversity in the face of ever-increasing human pressure is hampered by our
lack of basic information on species occurrence, distribution, abundance, habitat …

[HTML][HTML] Marine mammals and microplastics: a systematic review and call for standardisation

LJ Zantis, EL Carroll, SE Nelms, T Bosker - Environmental Pollution, 2021 - Elsevier
Microplastics receive significant societal and scientific attention due to increasing concerns
about their impact on the environment and human health. Marine mammals are considered …

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

G Meng, Y Li, C Yang, S Liu - Nucleic acids research, 2019 - academic.oup.com
Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

BE Deagle, AC Thomas, JC McInnes… - Molecular …, 2019 - Wiley Online Library
Advances in DNA sequencing technology have revolutionized the field of molecular analysis
of trophic interactions, and it is now possible to recover counts of food DNA sequences from …

Scrutinizing key steps for reliable metabarcoding of environmental samples

A Alberdi, O Aizpurua, MTP Gilbert… - Methods in Ecology …, 2018 - Wiley Online Library
Metabarcoding of environmental samples has many challenges and limitations that require
carefully considered laboratory and analysis workflows to ensure reliable results. We …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Diet tracing in ecology: Method comparison and selection

JM Nielsen, EL Clare, B Hayden… - Methods in Ecology …, 2018 - Wiley Online Library
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …

How quantitative is metabarcoding: A meta‐analytical approach

PD Lamb, E Hunter, JK Pinnegar, S Creer… - Molecular …, 2019 - Wiley Online Library
Metabarcoding has been used in a range of ecological applications such as taxonomic
assignment, dietary analysis and the analysis of environmental DNA. However, after a …

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

A Valentini, P Taberlet, C Miaud, R Civade… - Molecular …, 2016 - Wiley Online Library
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …

[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity

PF Thomsen, E Willerslev - Biological conservation, 2015 - Elsevier
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …