Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

AR Pacheco, M Moel, D Segrè - Nature communications, 2019 - nature.com
Metabolic exchange mediates interactions among microbes, hel** explain diversity in
microbial communities. As these interactions often involve a fitness cost, it is unclear how …

Measuring coevolutionary dynamics in species-rich communities

AR Hall, B Ashby, J Bascompte, KC King - Trends in Ecology & Evolution, 2020 - cell.com
Identifying different types of coevolutionary dynamics is important for understanding
biodiversity and infectious disease. Past work has often focused on pairs of interacting …

Obligate cross-feeding expands the metabolic niche of bacteria

L Oña, S Giri, N Avermann, M Kreienbaum… - Nature Ecology & …, 2021 - nature.com
Bacteria frequently engage in obligate metabolic mutualisms with other microorganisms.
However, it remains generally unclear how the resulting metabolic dependencies affect the …

The Pseudomonas aeruginosa T6SS-VgrG1b spike is topped by a PAAR protein eliciting DNA damage to bacterial competitors

P Pissaridou, LP Allsopp, S Wettstadt… - Proceedings of the …, 2018 - pnas.org
The type VI secretion system (T6SS) is a supramolecular complex involved in the delivery of
potent toxins during bacterial competition. Pseudomonas aeruginosa possesses three T6SS …

Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation

F Senne de Oliveira Lino, D Bajic, JCC Vila… - Nature …, 2021 - nature.com
Sugarcane ethanol fermentation represents a simple microbial community dominated by S.
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …

Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation

Y Geng, Y Guan, L Qiong, S Lu, M An, MJC Crabbe… - BMC biology, 2021 - Springer
Background Understanding how organisms evolve and adapt to extreme habitats is of
crucial importance in evolutionary ecology. Altitude gradients are an important determinant …

[HTML][HTML] Eco-evolutionary dynamics in microbial communities from spontaneous fermented foods

AY Alekseeva, AE Groenenboom, EJ Smid… - International journal of …, 2021 - mdpi.com
Eco-evolutionary forces are the key drivers of ecosystem biodiversity dynamics. This
resulted in a large body of theory, which has partially been experimentally tested by …

Determinants of high residual post-PCV13 pneumococcal vaccine-type carriage in Blantyre, Malawi: a modelling study

J Lourenço, U Obolski, TD Swarthout, A Gori… - BMC medicine, 2019 - Springer
Abstract Background In November 2011, Malawi introduced the 13-valent pneumococcal
conjugate vaccine (PCV13) into the routine infant schedule. Four to 7 years after introduction …

General statistical model shows that macroevolutionary patterns and processes are consistent with Darwinian gradualism

M Pagel, C O'Donovan, A Meade - Nature communications, 2022 - nature.com
Macroevolution posed difficulties for Darwin and later theorists because species'
phenotypes frequently change abruptly, or experience long periods of stasis, both counter to …

Antigenic evolution of SARS-CoV-2 in immunocompromised hosts

CA Smith, B Ashby - Evolution, Medicine, and Public Health, 2023 - academic.oup.com
Objectives/aims: Prolonged infections of immunocompromised individuals have been
proposed as a crucial source of new variants of SARS-CoV-2 during the COVID-19 …