Density-functional tight-binding: basic concepts and applications to molecules and clusters

F Spiegelman, N Tarrat, J Cuny, L Dontot… - … in physics: X, 2020 - Taylor & Francis
The scope of this article is to present an overview of the Density Functional based Tight
Binding (DFTB) method and its applications. The paper introduces the basics of DFTB and …

Large-scale computations in chemistry: a bird's eye view of a vibrant field

AV Akimov, OV Prezhdo - Chemical reviews, 2015 - ACS Publications
1.1. The Meaning of “Large Scale” In general, the term “large scale” can have one of the
following five meanings in computational chemistry:(1) large size: power-law and …

Theory and simulation of the environmental effects on FMO electronic transitions

C Olbrich, J Strumpfer, K Schulten… - The journal of physical …, 2011 - ACS Publications
Long-lived quantum coherence has been experimentally observed in the Fenna–Matthews–
Olson (FMO) light-harvesting complex. It is much debated which role thermal effects play …

Why are DNA and protein electron transfer so different?

DN Beratan - Annual review of physical chemistry, 2019 - annualreviews.org
The corpus of electron transfer (ET) theory provides considerable power to describe the
kinetics and dynamics of electron flow at the nanoscale. How is it, then, that nucleic acid …

Computational study of the role of counterions and solvent dielectric in determining the conductance of B-DNA

Y Wang, B Demir, H Mohammad, EE Oren… - Physical Review E, 2023 - APS
DNA naturally exists in a solvent environment, comprising water and salt molecules such as
sodium, potassium, magnesium, etc. Along with the sequence, the solvent conditions …

The assumption of a reliable instrument and other pitfalls to avoid when considering the reliability of data

K Nimon, LR Zientek, RK Henson - Frontiers in psychology, 2012 - frontiersin.org
The purpose of this article is to help researchers avoid common pitfalls associated with
reliability including incorrectly assuming that (a) measurement error always attenuates …

A hybrid approach to simulation of electron transfer in complex molecular systems

T Kubař, M Elstner - Journal of The Royal Society …, 2013 - royalsocietypublishing.org
Electron transfer (ET) reactions in biomolecular systems represent an important class of
processes at the interface of physics, chemistry and biology. The theoretical description of …

Extraordinary claims require extraordinary evidence: The case of non-local perception, a classical and Bayesian review of evidences

PE Tressoldi - Frontiers in Psychology, 2011 - frontiersin.org
Starting from the famous phrase “extraordinary claims require extraordinary evidence,” we
will present the evidence supporting the concept that human visual perception may have …

Excited states in DNA strands investigated by ultrafast laser spectroscopy

J Chen, Y Zhang, B Kohler - Photoinduced Phenomena in Nucleic Acids II …, 2015 - Springer
Ultrafast laser experiments on carefully selected DNA model compounds probe the effects of
base stacking, base pairing, and structural disorder on excited electronic states formed by …

Engineering nanometre-scale coherence in soft matter

C Liu, L **ang, Y Zhang, P Zhang, DN Beratan, Y Li… - Nature Chemistry, 2016 - nature.com
Electronic delocalization in redox-active polymers may be disrupted by the heterogeneity of
the environment that surrounds each monomer. When the differences in monomer redox …