Integrating non-mammalian model organisms in the diagnosis of rare genetic diseases in humans

S Yamamoto, O Kanca, MF Wangler… - Nature Reviews …, 2024 - nature.com
Next-generation sequencing technology has rapidly accelerated the discovery of genetic
variants of interest in individuals with rare diseases. However, showing that these variants …

Utility of genetic risk scores in type 1 diabetes

AM Luckett, MN Weedon, G Hawkes, RD Leslie… - Diabetologia, 2023 - Springer
Iterative advances in understanding of the genetics of type 1 diabetes have identified> 70
genetic regions associated with risk of the disease, including strong associations across the …

CADD v1. 7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions

M Schubach, T Maass, L Nazaretyan… - Nucleic acids …, 2024 - academic.oup.com
Abstract Machine Learning-based scoring and classification of genetic variants aids the
assessment of clinical findings and is employed to prioritize variants in diverse genetic …

The UCSC genome browser database: 2024 update

BJ Raney, GP Barber, A Benet-Pagès… - Nucleic acids …, 2024 - academic.oup.com
Abstract The UCSC Genome Browser (https://genome. ucsc. edu) is a web-based genomic
visualization and analysis tool that serves data to over 7,000 distinct users per day …

Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation

J Linder, D Srivastava, H Yuan, V Agarwal, DR Kelley - Nature Genetics, 2025 - nature.com
Sequence-based machine-learning models trained on genomics data improve genetic
variant interpretation by providing functional predictions describing their impact on the cis …

Ensembl 2024

PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) is a freely available genomic resource that has
produced high-quality annotations, tools, and services for vertebrates and model organisms …

jMorp: Japanese multi-omics reference panel update report 2023

S Tadaka, J Kawashima, E Hishinuma… - Nucleic Acids …, 2024 - academic.oup.com
Modern medicine is increasingly focused on personalized medicine, and multi-omics data is
crucial in understanding biological phenomena and disease mechanisms. Each ethnic …

Recombination between heterologous human acrocentric chromosomes

A Guarracino, S Buonaiuto, LG de Lima, T Potapova… - Nature, 2023 - nature.com
The short arms of the human acrocentric chromosomes 13, 14, 15, 21 and 22 (SAACs) share
large homologous regions, including ribosomal DNA repeats and extended segmental …

A harmonized public resource of deeply sequenced diverse human genomes

Z Koenig, MT Yohannes, LL Nkambule… - Genome …, 2024 - genome.cshlp.org
Underrepresented populations are often excluded from genomic studies owing in part to a
lack of resources supporting their analyses. The 1000 Genomes Project (1kGP) and Human …

Identification of constrained sequence elements across 239 primate genomes

LFK Kuderna, JC Ulirsch, S Rashid, M Ameen… - Nature, 2024 - nature.com
Noncoding DNA is central to our understanding of human gene regulation and complex
diseases,, and measuring the evolutionary sequence constraint can establish the functional …