Alternative therapeutic strategies to treat antibiotic-resistant pathogens
Resistance threatens to render antibiotics—which are essential for modern medicine—
ineffective, thus posing a threat to human health. The discovery of novel classes of …
ineffective, thus posing a threat to human health. The discovery of novel classes of …
Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction
Randomly barcoded transposon mutant libraries are powerful tools for studying gene
function and organization, assessing gene essentiality and pathways, discovering potential …
function and organization, assessing gene essentiality and pathways, discovering potential …
Combining CRISPRi and metabolomics for functional annotation of compound libraries
Molecular profiling of small molecules offers invaluable insights into the function of
compounds and allows for hypothesis generation about small-molecule direct targets and …
compounds and allows for hypothesis generation about small-molecule direct targets and …
Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Antisense peptide nucleic acids (PNAs) that target mRNAs of essential bacterial genes
exhibit specific bactericidal effects in several microbial species, but our mechanistic …
exhibit specific bactericidal effects in several microbial species, but our mechanistic …
Sm-like protein Rof inhibits transcription termination factor ρ by binding site obstruction and conformational insulation
Transcription termination factor ρ is a hexameric, RNA-dependent NTPase that can adopt
active closed-ring and inactive open-ring conformations. The Sm-like protein Rof, a homolog …
active closed-ring and inactive open-ring conformations. The Sm-like protein Rof, a homolog …
Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics
The critical role of the intestinal microbiota in human health and disease is well recognized.
Nevertheless, there are still large gaps in our understanding of the functions and …
Nevertheless, there are still large gaps in our understanding of the functions and …
The identification of essential cellular genes is critical for validating drug targets
T Xu, S Wang, T Ma, Y Dong, CR Ashby Jr, GF Hao - Drug Discovery Today, 2024 - Elsevier
Highlights•The identification of novel drug targets is a key step in drug innovation.•Essential
genes are vital for organism survival and are promising drug targets.•We describe in detail …
genes are vital for organism survival and are promising drug targets.•We describe in detail …
Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production
In this study, a 14-gene edited Pseudomonas putida KT2440 strain for heterologous
indigoidine production was examined using three distinct omic datasets. Transcriptomic data …
indigoidine production was examined using three distinct omic datasets. Transcriptomic data …
Lipopolysaccharide transport regulates bacterial sensitivity to a cell wall-degrading intermicrobial toxin
KL Trotta, BM Hayes, JP Schneider, J Wang… - PLoS …, 2023 - journals.plos.org
Gram-negative bacteria can antagonize neighboring microbes using a type VI secretion
system (T6SS) to deliver toxins that target different essential cellular features. Despite the …
system (T6SS) to deliver toxins that target different essential cellular features. Despite the …
Gradients in gene essentiality reshape antibacterial research
Essential genes encode the processes that are necessary for life. Until recently, commonly
applied binary classifications left no space between essential and non-essential genes. In …
applied binary classifications left no space between essential and non-essential genes. In …