Biclustering algorithms for biological data analysis: a survey

SC Madeira, AL Oliveira - IEEE/ACM transactions on …, 2004 - ieeexplore.ieee.org
A large number of clustering approaches have been proposed for the analysis of gene
expression data obtained from microarray experiments. However, the results from the …

Clustering algorithms: their application to gene expression data

J Oyelade, I Isewon, F Oladipupo… - … and Biology insights, 2016 - journals.sagepub.com
Gene expression data hide vital information required to understand the biological process
that takes place in a particular organism in relation to its environment. Deciphering the …

A systematic comparison and evaluation of biclustering methods for gene expression data

A Prelić, S Bleuler, P Zimmermann, A Wille… - …, 2006 - academic.oup.com
Motivation: In recent years, there have been various efforts to overcome the limitations of
standard clustering approaches for the analysis of gene expression data by grou** genes …

Clustering algorithms in biomedical research: a review

R Xu, DC Wunsch - IEEE reviews in biomedical engineering, 2010 - ieeexplore.ieee.org
Applications of clustering algorithms in biomedical research are ubiquitous, with typical
examples including gene expression data analysis, genomic sequence analysis, biomedical …

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood… - Genome biology, 2006 - Springer
We present a method (the Inferelator) for deriving genome-wide transcriptional regulatory
interactions, and apply the method to predict a large portion of the regulatory network of the …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

Biclustering in data mining

S Busygin, O Prokopyev, PM Pardalos - Computers & Operations Research, 2008 - Elsevier
Biclustering consists in simultaneous partitioning of the set of samples and the set of their
attributes (features) into subsets (classes). Samples and features classified together are …

Big data analytics in bioinformatics: A machine learning perspective

H Kashyap, HA Ahmed, N Hoque, S Roy… - arxiv preprint arxiv …, 2015 - arxiv.org
Bioinformatics research is characterized by voluminous and incremental datasets and
complex data analytics methods. The machine learning methods used in bioinformatics are …

Techniques for clustering gene expression data

G Kerr, HJ Ruskin, M Crane, P Doolan - Computers in biology and …, 2008 - Elsevier
Many clustering techniques have been proposed for the analysis of gene expression data
obtained from microarray experiments. However, choice of suitable method (s) for a given …

Multi-objective evolutionary biclustering of gene expression data

S Mitra, H Banka - Pattern Recognition, 2006 - Elsevier
Biclustering or simultaneous clustering of both genes and conditions have generated
considerable interest over the past few decades, particularly related to the analysis of high …