Clinical relevance of blood-based ctDNA analysis: mutation detection and beyond

L Keller, Y Belloum, H Wikman, K Pantel - British journal of cancer, 2021 - nature.com
Cell-free DNA (cfDNA) derived from tumours is present in the plasma of cancer patients. The
majority of currently available studies on the use of this circulating tumour DNA (ctDNA) deal …

Structural variation in the sequencing era

SS Ho, AE Urban, RE Mills - Nature Reviews Genetics, 2020 - nature.com
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …

Methylglyoxal, a highly reactive dicarbonyl compound, in diabetes, its vascular complications, and other age-related diseases

CG Schalkwijk, CDA Stehouwer - Physiological reviews, 2020 - journals.physiology.org
The formation and accumulation of methylglyoxal (MGO), a highly reactive dicarbonyl
compound, has been implicated in the pathogenesis of type 2 diabetes, vascular …

[HTML][HTML] Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders

D Porubsky, W Höps, H Ashraf, PH Hsieh… - Cell, 2022 - cell.com
Unlike copy number variants (CNVs), inversions remain an underexplored genetic variation
class. By integrating multiple genomic technologies, we discover 729 inversions in 41 …

A roadmap for understanding the evolutionary significance of structural genomic variation

C Mérot, RA Oomen, A Tigano… - Trends in Ecology & …, 2020 - cell.com
Structural genomic variants (SVs) are ubiquitous and play a major role in adaptation and
speciation. Yet, comparative and population genomics have focused predominantly on gene …

Cytochrome P450 structure, function and clinical significance: a review

P Manikandan, S Nagini - Current drug targets, 2018 - ingentaconnect.com
Background: The cytochrome P450 (CYP) enzymes are membrane-bound hemoproteins
that play a pivotal role in the detoxification of xenobiotics, cellular metabolism and …

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

X Li, JI Yang, M Shen, XL **e, GJ Liu, YX Xu… - Nature …, 2020 - nature.com
Understanding the genetic changes underlying phenotypic variation in sheep (Ovis aries)
may facilitate our efforts towards further improvement. Here, we report the deep …

Copy number variation is highly correlated with differential gene expression: a pan-cancer study

X Shao, N Lv, J Liao, J Long, R Xue, N Ai, D Xu… - BMC medical …, 2019 - Springer
Background Cancer is a heterogeneous disease with many genetic variations. Lines of
evidence have shown copy number variations (CNVs) of certain genes are involved in …

An integrated map of structural variation in 2,504 human genomes

PH Sudmant, T Rausch, EJ Gardner, RE Handsaker… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

SVIM: structural variant identification using mapped long reads

D Heller, M Vingron - Bioinformatics, 2019 - academic.oup.com
Motivation Structural variants are defined as genomic variants larger than 50 bp. They have
been shown to affect more bases in any given genome than single-nucleotide …