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Plant pan-genomes are the new reference
Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …
of multiple related individuals. The high degree of genomic variation observed led to the …
Grey mould of strawberry, a devastating disease caused by the ubiquitous necrotrophic fungal pathogen Botrytis cinerea
The fungal pathogen Botrytis cinerea causes grey mould, a commercially damaging disease
of strawberry. This pathogen affects fruit in the field, storage, transport and market. The …
of strawberry. This pathogen affects fruit in the field, storage, transport and market. The …
Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance
Polyploidy (genome duplication) is a pivotal force in evolution. However, the interactions
between parental genomes in a polyploid nucleus, frequently involving subgenome …
between parental genomes in a polyploid nucleus, frequently involving subgenome …
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haplotype-resolved de novo assembly is the ultimate solution to the study of sequence
variations in a genome. However, existing algorithms either collapse heterozygous alleles …
variations in a genome. However, existing algorithms either collapse heterozygous alleles …
Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum
Abstract Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important
ornamental plant with great economic, cultural, and symbolic value. However, research on …
ornamental plant with great economic, cultural, and symbolic value. However, research on …
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …
source of approximately 60% of coffee products worldwide, and its cultivated accessions …
Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages
Poaceae members shared a whole-genome duplication called rho. However, little is known
about the evolutionary pattern of the rho-derived duplicates among Poaceae lineages and …
about the evolutionary pattern of the rho-derived duplicates among Poaceae lineages and …
Reference genome assemblies reveal the origin and evolution of allohexaploid oat
Common oat (Avena sativa) is an important cereal crop serving as a valuable source of
forage and human food. Although reference genomes of many important crops have been …
forage and human food. Although reference genomes of many important crops have been …
Highly accurate long-read HiFi sequencing data for five complex genomes
Abstract The PacBio® HiFi sequencing method yields highly accurate long-read sequencing
datasets with read lengths averaging 10–25 kb and accuracies greater than 99.5%. These …
datasets with read lengths averaging 10–25 kb and accuracies greater than 99.5%. These …
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
Long-term climate change and periodic environmental extremes threaten food and fuel
security and global crop productivity,–. Although molecular and adaptive breeding strategies …
security and global crop productivity,–. Although molecular and adaptive breeding strategies …