The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability

Y He, Z **ang, J Zheng, Y Lin, JA Overton… - Journal of biomedical …, 2018 - Springer
Ontologies are critical to data/metadata and knowledge standardization, sharing, and
analysis. With hundreds of biological and biomedical ontologies developed, it has become …

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation

J Malone, A Brown, AL Lister, J Ison, D Hull… - Journal of biomedical …, 2014 - Springer
Motivation Biomedical ontologists to date have concentrated on ontological descriptions of
biomedical entities such as gene products and their attributes, phenotypes and so on …

Practical ontology pattern instantiation, discovery, and maintenance with reasonable ontology templates

MG Skjæveland, DP Lupp, LH Karlsen… - The Semantic Web–ISWC …, 2018 - Springer
Abstract Reasonable Ontology Templates () is a language for representing ontology
modelling patterns in the form of parameterised ontologies. Ontology templates are simple …

The Drosophila anatomy ontology

M Costa, S Reeve, G Grumbling… - Journal of biomedical …, 2013 - Springer
Background Anatomy ontologies are query-able classifications of anatomical structures.
They provide a widely-used means for standardising the annotation of phenotypes and …

[HTML][HTML] Generic ontology of datatypes

P Panov, LN Soldatova, S Džeroski - Information Sciences, 2016 - Elsevier
We present OntoDT, a generic ontology for the representation of scientific knowledge about
datatypes. OntoDT defines basic entities, such as datatype, properties of datatypes …

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns

Z **ang, J Zheng, Y Lin, Y He - Journal of biomedical semantics, 2015 - Springer
Background It is time-consuming to build an ontology with many terms and axioms. Thus it is
desired to automate the process of ontology development. Ontology Design Patterns (ODPs) …

OntoMaton: a bioportal powered ontology widget for Google Spreadsheets

E Maguire, A González-Beltrán, PL Whetzel… - …, 2013 - academic.oup.com
Motivation: Data collection in spreadsheets is ubiquitous, but current solutions lack support
for collaborative semantic annotation that would promote shared and interdisciplinary …

The semantic web takes wing: Programming ontologies with tawny-owl

P Lord - arxiv preprint arxiv:1303.0213, 2013 - arxiv.org
The Tawny-OWL library provides a fully-programmatic environment for ontology building; it
enables the use of a rich set of tools for ontology development, by recasting development as …

[PDF][PDF] Template libraries for industrial asset maintenance: A methodology for scalable and maintainable ontologies

DP Lupp, M Hodkiewicz… - CEUR Workshop …, 2020 - ssws-ws.org
Data in engineering industries is highly standardized and informationdense, and usually
distributed across many different sources with incompatible formats and implicit semantics …

Lifting tabular data to rdf: A survey

M Fiorelli, A Stellato - … : 14th International Conference, MTSR 2020, Madrid …, 2021 - Springer
Tabular data formats (eg CSV and spreadsheets) combine ease of use, versatility and
compatibility with information management systems. Despite their numerous advantages …