Containers for computational reproducibility

D Moreau, K Wiebels, C Boettiger - Nature Reviews Methods Primers, 2023 - nature.com
The fast-paced development of computational tools has enabled tremendous scientific
progress in recent years. However, this rapid surge of technological capability also comes at …

Reproducible research in R: A tutorial on how to do the same thing more than once

A Peikert, CJ Van Lissa, AM Brandmaier - Psych, 2021 - mdpi.com
Simple Summary Reproducibility has long been considered integral to the scientific method.
An analysis is considered reproducible if an independent person can obtain the same …

Ten simple rules for writing Dockerfiles for reproducible data science

D Nüst, V Sochat, B Marwick, SJ Eglen… - PLoS computational …, 2020 - journals.plos.org
Computational science has been greatly improved by the use of containers for packaging
software and data dependencies. In a scholarly context, the main drivers for using these …

Packaging data analytical work reproducibly using R (and friends)

B Marwick, C Boettiger, L Mullen - The American Statistician, 2018 - Taylor & Francis
Computers are a central tool in the research process, enabling complex and large-scale
data analysis. As computer-based research has increased in complexity, so have the …

Computational reproducibility via containers in psychology

A Clyburne-Sherin, X Fei, SA Green - Meta-psychology, 2019 - conferences.lnu.se
Scientific progress relies on the replication and reuse of research. Recent studies suggest,
however, that sharing code and data does not suffice for computational reproducibility …

Computational reproducibility in geoscientific papers: Insights from a series of studies with geoscientists and a reproduction study

M Konkol, C Kray, M Pfeiffer - International Journal of Geographical …, 2019 - Taylor & Francis
Reproducibility is a cornerstone of science and thus for geographic research as well.
However, studies in other disciplines such as biology have shown that published work is …

Develo** an automated iterative near‐term forecasting system for an ecological study

EP White, GM Yenni, SD Taylor… - Methods in Ecology …, 2019 - Wiley Online Library
Most forecasts for the future state of ecological systems are conducted once and never
updated or assessed. As a result, many available ecological forecasts are not based on the …

Implementing GitHub actions continuous integration to reduce error rates in ecological data collection

AY Kim, V Herrmann, R Barreto… - Methods in Ecology …, 2022 - Wiley Online Library
Accurate field data are essential to understanding ecological systems and forecasting their
responses to global change. Yet, data collection errors are common, and data analysis often …

Functional R code is rare in species distribution and abundance papers

KF Kellner, JW Doser, JL Belant - Ecology, 2025 - Wiley Online Library
Analytic reproducibility is important for scientific credibility in ecology, but the extent to which
scientific literature meets this criterion is not well understood. We surveyed 497 papers …

eplusr: A framework for integrating building energy simulation and data-driven analytics

H Jia, A Chong - Energy and Buildings, 2021 - Elsevier
Building energy simulation (BES) has been widely adopted for the investigation of building
environmental and energy performance for different design and retrofit alternatives. Data …