Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Machine learning for predicting phenotype from genotype and environment

T Guo, X Li - Current Opinion in Biotechnology, 2023 - Elsevier
Predicting phenotype with genomic and environmental information is critically needed and
challenging. Machine learning methods have emerged as powerful tools to make accurate …

[HTML][HTML] Satellite-enabled enviromics to enhance crop improvement

RT Resende, L Hickey, CH Amaral, LL Peixoto… - Molecular Plant, 2024 - cell.com
Enviromics refers to the characterization of micro-and macroenvironments based on large-
scale environmental datasets. By providing genotypic recommendations with predictive …

The role of artificial intelligence in crop improvement

KL Negus, X Li, SM Welch, J Yu - Advances in Agronomy, 2024 - Elsevier
The growing global demands for agricultural goods will require accelerated crop
improvement. High-throughput genomic, phenomic, enviromic and other multi-omic data …

Environmental context of phenotypic plasticity in flowering time in sorghum and rice

T Guo, J Wei, X Li, J Yu - Journal of Experimental Botany, 2024 - academic.oup.com
Phenotypic plasticity is an important topic in biology and evolution. However, how to
generate broadly applicable insights from individual studies remains a challenge. Here, with …

Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize

LE Tibbs-Cortes, T Guo, CM Andorf, X Li… - Genome Research, 2024 - genome.cshlp.org
Maize phenotypes are plastic, determined by the complex interplay of genetics and
environmental variables. Uncovering the genes responsible and understanding how their …

Big data and artificial intelligence‐aided crop breeding: Progress and prospects

W Zhu, W Li, H Zhang, L Li - Journal of Integrative Plant Biology, 2024 - Wiley Online Library
The past decade has witnessed rapid developments in gene discovery, biological big data
(BBD), artificial intelligence (AI)‐aided technologies, and molecular breeding. These …

Embracing plant plasticity or robustness as a means of ensuring food security

S Alseekh, A Klemmer, J Yan, T Guo… - Nature …, 2025 - nature.com
The dual challenges of global population explosion and environmental deterioration
represent major hurdles for 21st Century agriculture culminating in an unprecedented …

Prediction of and for new environments: What's your model?

HP Piepho - Molecular Plant, 2022 - cell.com
Genomic prediction (GP) and genome-wide association studies (GWAS) employ genetic
variants (markers) to predict phenotypic performance and identify superior genotypes. In …

Suitability evaluation of crop variety via graph neural network

Q Zhang, B Li, Y Zhang, S Wang - Computational Intelligence …, 2022 - Wiley Online Library
With the continuous growth of the global population, insufficient food production has become
an urgent problem to be solved in most countries. At present, using artificial intelligence …