The polymer physics of single DNA confined in nanochannels
In recent years, applications and experimental studies of DNA in nanochannels have
stimulated the investigation of the polymer physics of DNA in confinement. Recent advances …
stimulated the investigation of the polymer physics of DNA in confinement. Recent advances …
Theory of wormlike polymer chains in confinement
JZY Chen - Progress in Polymer Science, 2016 - Elsevier
A semiflexible polymer chain shows characteristic local chain persistency and finite
extensibility. Confinement of such a polymer introduces a confinement length scale that …
extensibility. Confinement of such a polymer introduces a confinement length scale that …
Scaling theory of DNA confined in nanochannels and nanoslits
T Odijk - Physical Review E—Statistical, Nonlinear, and Soft …, 2008 - APS
A scaling analysis is presented of the statistics of long DNA confined in nanochannels and
nanoslits. It is argued that there are several regimes in between the de Gennes and Odijk …
nanoslits. It is argued that there are several regimes in between the de Gennes and Odijk …
Extended de Gennes regime of DNA confined in a nanochannel
Scaling regimes for polymers confined to tubular channels are well established when the
channel cross-sectional dimension is either very small (Odjik regime) or large (classic de …
channel cross-sectional dimension is either very small (Odjik regime) or large (classic de …
Free energy and extension of a semiflexible polymer in cylindrical confining geometries
We consider a long, semiflexible polymer with persistence length P and contour length L
fluctuating in a narrow cylindrical channel of diameter D. In the regime D⪡ P⪡ L the free …
fluctuating in a narrow cylindrical channel of diameter D. In the regime D⪡ P⪡ L the free …
Extension of DNA in a nanochannel as a rod-to-coil transition
DNA confinement in nanochannels is emerging as an important tool for genomics and an
excellent platform for testing the theories of confined wormlike polymers. Using cutting-edge …
excellent platform for testing the theories of confined wormlike polymers. Using cutting-edge …
DNA confined in nanochannels: Hairpin tightening by entropic depletion
T Odijk - The Journal of chemical physics, 2006 - pubs.aip.org
A theory is presented of the elongation of double-stranded DNA confined in a nanochannel
based on a study of the formation of hairpins. A hairpin becomes constrained as it …
based on a study of the formation of hairpins. A hairpin becomes constrained as it …
Influence of chain rigidity on the phase behavior of wormlike diblock copolymers
Y Jiang, JZY Chen - Physical review letters, 2013 - APS
We utilize the wormlike chain model in the framework of the self-consistent field theory to
investigate the influence of chain rigidity on the phase diagram of AB diblock copolymers in …
investigate the influence of chain rigidity on the phase diagram of AB diblock copolymers in …
Electrokinetically-driven transport of DNA through focused ion beam milled nanofluidic channels
LD Menard, JM Ramsey - Analytical chemistry, 2013 - ACS Publications
The electrophoretically driven transport of double-stranded λ-phage DNA through focused
ion beam (FIB) milled nanochannels is described. Nanochannels were fabricated having …
ion beam (FIB) milled nanochannels is described. Nanochannels were fabricated having …
Numerical study of linear and circular model DNA chains confined in a slit: metric and topological properties
Advanced Monte Carlo simulations are used to study the effect of nanoslit confinement on
metric and topological properties of model DNA chains. We consider both linear and …
metric and topological properties of model DNA chains. We consider both linear and …