From genotype to phenotype: Raman spectroscopy and machine learning for label-free single-cell analysis

Y Zhang, K Chang, B Ogunlade, L Herndon… - ACS …, 2024 - ACS Publications
Raman spectroscopy has made significant progress in biosensing and clinical research.
Here, we describe how surface-enhanced Raman spectroscopy (SERS) assisted with …

Emergent properties of microbial activity in heterogeneous soil microenvironments: different research approaches are slowly converging, yet major challenges remain

PC Baveye, W Otten, A Kravchenko… - Frontiers in …, 2018 - frontiersin.org
Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data
showing that the bulk, macroscopic parameters (eg, granulometry, pH, soil organic matter …

Recent developments in Raman spectral analysis of microbial single cells: Techniques and applications

H Jayan, H Pu, DW Sun - Critical Reviews in Food Science and …, 2022 - Taylor & Francis
The conventional microbial cell analyses are mostly population-averaged methods that
conceal the characteristics of single-cell in the community. Single-cell analysis can provide …

Raman spectroscopy combined with machine learning for rapid detection of food-borne pathogens at the single-cell level

S Yan, S Wang, J Qiu, M Li, D Li, D Xu, D Li, Q Liu - Talanta, 2021 - Elsevier
Rapid detection of food-borne pathogens in early food contamination is a permanent topic to
ensure food safety and prevent public health problems. Raman spectroscopy, a label-free …

Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics

HZ Li, K Yang, H Liao, SB Lassen… - Proceedings of the …, 2022 - National Acad Sciences
Antimicrobial resistance (AMR) in soils represents a serious risk to human health through
the food chain and human–nature contact. However, the active antibiotic-resistant bacteria …

Cell death stages in single apoptotic and necrotic cells monitored by Raman microspectroscopy

E Brauchle, S Thude, SY Brucker… - Scientific reports, 2014 - nature.com
Although apoptosis and necrosis have distinct features, the identification and discrimination
of apoptotic and necrotic cell death in vitro is challenging. Immunocytological and …

Rare cell isolation and analysis in microfluidics

Y Chen, P Li, PH Huang, Y **e, JD Mai, L Wang… - Lab on a Chip, 2014 - pubs.rsc.org
Rare cells are low-abundance cells in a much larger population of background cells.
Conventional benchtop techniques have limited capabilities to isolate and analyze rare cells …

Single cell stable isotope probing in microbiology using Raman microspectroscopy

Y Wang, WE Huang, L Cui, M Wagner - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Single cell Raman spectra (SCRS) are label-free and intrinsic biochemical
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …

Single cell optical imaging and spectroscopy

AS Stender, K Marchuk, C Liu, S Sander… - Chemical …, 2013 - ACS Publications
In his 1665 treatise, Micrographia, Robert Hooke described the many observations he had
made using a microscope, including compartment-like structures in cork samples that he …

Direct metabolomics for plant cells by live single-cell mass spectrometry

T Fujii, S Matsuda, ML Tejedor, T Esaki, I Sakane… - Nature protocols, 2015 - nature.com
Live single-cell mass spectrometry (live MS) provides a mass spectrum that shows
thousands of metabolite peaks from a single live plant cell within minutes. By using an …