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Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …
Opportunities and challenges of macrogenetic studies
The rapidly emerging field of macrogenetics focuses on analysing publicly accessible
genetic datasets from thousands of species to explore large-scale patterns and predictors of …
genetic datasets from thousands of species to explore large-scale patterns and predictors of …
ipyrad: Interactive assembly and analysis of RADseq datasets
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
For half a century population genetics studies have put type II restriction endonucleases to
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …
Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million
farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report …
farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report …
Genomic landscape of the global oak phylogeny
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
RAD capture (Rapture): flexible and efficient sequence-based genoty**
Massively parallel sequencing has revolutionized many areas of biology, but sequencing
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genoty**-by-sequencing approach
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …
sequencing in many species providing unprecedented discovery and characterization of …