The immune epitope database and analysis resource in epitope discovery and synthetic vaccine design

W Fleri, S Paul, SK Dhanda, S Mahajan, X Xu… - Frontiers in …, 2017‏ - frontiersin.org
The task of epitope discovery and vaccine design is increasingly reliant on bioinformatics
analytic tools and access to depositories of curated data relevant to immune reactions and …

Exploring Klebsiella pneumoniae capsule polysaccharide proteins to design multiepitope subunit vaccine to fight against pneumonia

J Dey, SR Mahapatra, S Lata, S Patro… - Expert Review of …, 2022‏ - Taylor & Francis
Background Klebsiella pneumoniae is an emerging human pathogen causing neonatal lung
disease, catheter-associated infections, and nosocomial outbreaks with high fatality rates …

Cross-reactive CD4+ T cells enhance SARS-CoV-2 immune responses upon infection and vaccination

L Loyal, J Braun, L Henze, B Kruse, M Dingeldey… - Science, 2021‏ - science.org
INTRODUCTION The clinical manifestations of COVID-19 vary from asymptomatic infection
to respiratory failure. Severe disease courses are primarily associated with advanced age …

Identifying specificity groups in the T cell receptor repertoire

J Glanville, H Huang, A Nau, O Hatton, LE Wagar… - Nature, 2017‏ - nature.com
T cell receptor (TCR) sequences are very diverse, with many more possible sequence
combinations than T cells in any one individual,,,. Here we define the minimal requirements …

Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis

E Ansaldo, LC Slayden, KL Ching, MA Koch, NK Wolf… - Science, 2019‏ - science.org
Intestinal adaptive immune responses influence host health, yet only a few intestinal
bacteria species that induce cognate adaptive immune responses during homeostasis have …

IEDB-AR: immune epitope database—analysis resource in 2019

SK Dhanda, S Mahajan, S Paul, Z Yan… - Nucleic acids …, 2019‏ - academic.oup.com
Abstract The Immune Epitope Database Analysis Resource (IEDB-AR, http://tools. iedb. org/)
is a companion website to the IEDB that provides computational tools focused on the …

Predicting HLA class II antigen presentation through integrated deep learning

B Chen, MS Khodadoust, N Olsson, LE Wagar… - Nature …, 2019‏ - nature.com
Accurate prediction of antigen presentation by human leukocyte antigen (HLA) class II
molecules would be valuable for vaccine development and cancer immunotherapies …

[HTML][HTML] Heterogeneous tumor-immune microenvironments among differentially growing metastases in an ovarian cancer patient

A Jiménez-Sánchez, D Memon, S Pourpe… - Cell, 2017‏ - cell.com
We present an exceptional case of a patient with high-grade serous ovarian cancer, treated
with multiple chemotherapy regimens, who exhibited regression of some metastatic lesions …

Contriving multi-epitope subunit of vaccine for COVID-19: immunoinformatics approaches

R Dong, Z Chu, F Yu, Y Zha - Frontiers in immunology, 2020‏ - frontiersin.org
COVID-19 has recently become the most serious threat to public health, and its prevalence
has been increasing at an alarming rate. The incubation period for the virus is~ 1–14 days …

A first-in-human germline-targeting HIV nanoparticle vaccine induced broad and publicly targeted helper T cell responses

KW Cohen, SC De Rosa, WJ Fulp… - Science translational …, 2023‏ - science.org
The engineered outer domain germline targeting version 8 (eOD-GT8) 60-mer nanoparticle
was designed to prime VRC01-class HIV-specific B cells that would need to be matured …