Methods for map** 3D chromosome architecture
R Kempfer, A Pombo - Nature Reviews Genetics, 2020 - nature.com
Determining how chromosomes are positioned and folded within the nucleus is critical to
understanding the role of chromatin topology in gene regulation. Several methods are …
understanding the role of chromatin topology in gene regulation. Several methods are …
The role of 3D genome organization in development and cell differentiation
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …
packaged inside the nucleus. This complex genome organization includes multiscale …
Integrated spatial genomics reveals global architecture of single nuclei
Identifying the relationships between chromosome structures, nuclear bodies, chromatin
states and gene expression is an overarching goal of nuclear-organization studies …
states and gene expression is an overarching goal of nuclear-organization studies …
[HTML][HTML] Organization of chromatin by intrinsic and regulated phase separation
Eukaryotic chromatin is highly condensed but dynamically accessible to regulation and
organized into subdomains. We demonstrate that reconstituted chromatin undergoes …
organized into subdomains. We demonstrate that reconstituted chromatin undergoes …
Biophysical forces mediated by respiration maintain lung alveolar epithelial cell fate
Lungs undergo mechanical strain during breathing, but how these biophysical forces affect
cell fate and tissue homeostasis are unclear. We show that biophysical forces through …
cell fate and tissue homeostasis are unclear. We show that biophysical forces through …
[HTML][HTML] Multiscale 3D genome rewiring during mouse neural development
Chromosome conformation capture technologies have revealed important insights into
genome folding. Yet, how spatial genome architecture is related to gene expression and cell …
genome folding. Yet, how spatial genome architecture is related to gene expression and cell …
Transcription factors and 3D genome conformation in cell-fate decisions
How cells adopt different identities has long fascinated biologists. Signal transduction in
response to environmental cues results in the activation of transcription factors that …
response to environmental cues results in the activation of transcription factors that …
Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus
Eukaryotic genomes are packaged into a 3-dimensional structure in the nucleus. Current
methods for studying genome-wide structure are based on proximity ligation. However, this …
methods for studying genome-wide structure are based on proximity ligation. However, this …
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
The molecular mechanisms underlying folding of mammalian chromosomes remain poorly
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
Lamina-associated domains: links with chromosome architecture, heterochromatin, and gene repression
In metazoan cell nuclei, hundreds of large chromatin domains are in close contact with the
nuclear lamina. Such lamina-associated domains (LADs) are thought to help organize …
nuclear lamina. Such lamina-associated domains (LADs) are thought to help organize …