Zebrafish disease models in drug discovery: from preclinical modelling to clinical trials

EE Patton, LI Zon, DM Langenau - Nature reviews Drug discovery, 2021 - nature.com
Numerous drug treatments that have recently entered the clinic or clinical trials have their
genesis in zebrafish. Zebrafish are well established for their contribution to developmental …

Single-cell RNA sequencing for the study of development, physiology and disease

SS Potter - Nature Reviews Nephrology, 2018 - nature.com
An ongoing technological revolution is continually improving our ability to carry out very high-
resolution studies of gene expression patterns. Current technology enables the global gene …

Zebrafish information network, the knowledgebase for Danio rerio research

YM Bradford, CE Van Slyke, L Ruzicka, A Singer… - Genetics, 2022 - academic.oup.com
Abstract The Zebrafish Information Network (zfin. org) is the central repository for Danio rerio
genetic and genomic data. The Zebrafish Information Network has served the zebrafish …

Single-cell transcriptomics meets lineage tracing

L Kester, A Van Oudenaarden - Cell stem cell, 2018 - cell.com
Reconstructing lineage relationships between cells within a tissue or organism is a long-
standing aim in biology. Traditionally, lineage tracing has been achieved through the …

Single-cell trajectories reconstruction, exploration and map** of omics data with STREAM

H Chen, L Albergante, JY Hsu, CA Lareau… - Nature …, 2019 - nature.com
Single-cell transcriptomic assays have enabled the de novo reconstruction of lineage
differentiation trajectories, along with the characterization of cellular heterogeneity and state …

Zebrafish patient avatars in cancer biology and precision cancer therapy

M Fazio, J Ablain, Y Chuan, DM Langenau… - Nature Reviews …, 2020 - nature.com
In precision oncology, two major strategies are being pursued for predicting clinically
relevant tumour behaviours, such as treatment response and emergence of drug resistance …

[HTML][HTML] A single-cell transcriptome atlas for zebrafish development

DR Farnsworth, LM Saunders, AC Miller - Developmental biology, 2020 - Elsevier
The ability to define cell types and how they change during organogenesis is central to our
understanding of animal development and human disease. Despite the crucial nature of this …

Proteomic analysis of single mammalian cells enabled by microfluidic nanodroplet sample preparation and ultrasensitive NanoLC‐MS

Y Zhu, G Clair, WB Chrisler, Y Shen, R Zhao… - Angewandte …, 2018 - Wiley Online Library
We report on the quantitative proteomic analysis of single mammalian cells. Fluorescence‐
activated cell sorting was employed to deposit cells into a newly developed nanodroplet …

[HTML][HTML] Visualizing engrafted human cancer and therapy responses in immunodeficient zebrafish

C Yan, DC Brunson, Q Tang, D Do, NA Iftimia… - Cell, 2019 - cell.com
Xenograft cell transplantation into immunodeficient mice has become the gold standard for
assessing pre-clinical efficacy of cancer drugs, yet direct visualization of single-cell …

Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary

Y Liu, ME Kossack, ME McFaul, LN Christensen… - Elife, 2022 - elifesciences.org
Zebrafish are an established research organism that has made many contributions to our
understanding of vertebrate tissue and organ development, yet there are still significant …