Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

Reap the crop wild relatives for breeding future crops

A Bohra, B Kilian, S Sivasankar, M Caccamo… - Trends in …, 2022 - cell.com
Crop wild relatives (CWRs) have provided breeders with several'game-changing'traits or
genes that have boosted crop resilience and global agricultural production. Advances in …

Multiple wheat genomes reveal global variation in modern breeding

S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa… - Nature, 2020 - nature.com
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly

T Zhu, L Wang, H Rimbert, JC Rodriguez… - The Plant …, 2021 - Wiley Online Library
Until recently, achieving a reference‐quality genome sequence for bread wheat was long
thought beyond the limits of genome sequencing and assembly technology, primarily due to …

Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat

H Wang, S Sun, W Ge, L Zhao, B Hou, K Wang, Z Lyu… - Science, 2020 - science.org
INTRODUCTION Fusarium head blight (FHB) is a fungal disease that devastates global
wheat production, with losses of billions of dollars annually. Unlike foliar diseases, FHB …

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

Y Hu, J Chen, L Fang, Z Zhang, W Ma, Y Niu, L Ju… - Nature …, 2019 - nature.com
Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide.
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …

Durum wheat genome highlights past domestication signatures and future improvement targets

M Maccaferri, NS Harris, SO Twardziok, RK Pasam… - Nature …, 2019 - nature.com
The domestication of wild emmer wheat led to the selection of modern durum wheat, grown
mainly for pasta production. We describe the 10.45 gigabase (Gb) assembly of the genome …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

Long-read sequence assembly: a technical evaluation in barley

M Mascher, T Wicker, J Jenkins, C Plott, T Lux… - The Plant …, 2021 - academic.oup.com
Sequence assembly of large and repeat-rich plant genomes has been challenging,
requiring substantial computational resources and often several complementary sequence …