The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

FB Bastian, J Roux, A Niknejad, A Comte… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …

A benchmark of gene expression tissue-specificity metrics

N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekee**. This property is of interest to molecular …

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

C Wang, B Gong, PR Bushel, J Thierry-Mieg… - Nature …, 2014 - nature.com
The concordance of RNA-sequencing (RNA-seq) with microarrays for genome-wide
analysis of differential gene expression has not been rigorously assessed using a range of …

Subsets of myeloid-derived suppressor cells in tumor-bearing mice

JI Youn, S Nagaraj, M Collazo… - The Journal of …, 2008 - journals.aai.org
Myeloid-derived suppressor cells (MDSC) are a heterogeneous group of cells that play a
critical role in tumor associated immune suppression. In an attempt to identify a specific …

Experimental design and low-level analysis of microarray data

BM Bolstad, F Collin, KM Simpson, RA Irizarry… - International review of …, 2004 - Elsevier
Publisher Summary This chapter reviews the design and low-level analysis of microarray
experiments. Microarray experiments are used to quantify and compare gene expression on …

GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox

P Zimmermann, M Hirsch-Hoffmann, L Hennig… - Plant …, 2004 - academic.oup.com
High-throughput gene expression analysis has become a frequent and powerful research
tool in biology. At present, however, few software applications have been developed for …

Characterization of the nature of granulocytic myeloid-derived suppressor cells in tumor-bearing mice

JI Youn, M Collazo, IN Shalova… - Journal of leukocyte …, 2012 - academic.oup.com
MDSCs are a group of cells with potent immune-suppressive activity. These cells
accumulate in many pathologic conditions and play a major role in the regulation of immune …

[PDF][PDF] The making of gametes in higher plants

L Boavida, JD Becker, JA Feijo - International Journal of …, 2005 - arca.igc.gulbenkian.pt
Higher plants have evolved to be one of the predominant life forms on this planet. A great
deal of this evolutionary success relies in a very short gametophytic phase which underlies …

Biological and molecular heterogeneity of breast cancers correlates with their cancer stem cell content

S Pece, D Tosoni, S Confalonieri, G Mazzarol… - Cell, 2010 - cell.com
Pathways that govern stem cell (SC) function are often subverted in cancer. Here, we report
the isolation to near purity of human normal mammary SCs (hNMSCs), from cultured …

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

Q Liao, C Liu, X Yuan, S Kang, R Miao… - Nucleic acids …, 2011 - academic.oup.com
Although accumulating evidence has provided insight into the various functions of long-non-
coding RNAs (lncRNAs), the exact functions of the majority of such transcripts are still …