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Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
K Guin, Y Chen, R Mishra, SRBM Muzaki… - Elife, 2020 - elifesciences.org
Centromeres of Candida albicans form on unique and different DNA sequences but a
closely related species, Candida tropicalis, possesses homogenized inverted repeat (HIR) …
closely related species, Candida tropicalis, possesses homogenized inverted repeat (HIR) …
CDK4 and CDK6 upregulation promotes DNA replication stress, genomic instability and resistance to EGFR targeted therapy in lung cancer
Genetic interactions impact both normal human physiology and human diseases, such as
cancer. Here, we study genetic interactions through the lens of human lung cancers driven …
cancer. Here, we study genetic interactions through the lens of human lung cancers driven …
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs
Ever since single-cell sequencing (scDNA-seq) was coined 'method of the year'in 2013, it
has provided many insights into the evolution of tumors, viewed as a branching process of …
has provided many insights into the evolution of tumors, viewed as a branching process of …
Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines
Background Hi-C and its variant techniques have been developed to capture the spatial
organization of chromatin. Normalization of Hi-C contact map is essential for accurate …
organization of chromatin. Normalization of Hi-C contact map is essential for accurate …
Clustering, Classification, and Simulation of Evolutionarily Related Sequences in the Context of Cancer and Viral Spread
Z Tayebi - 2024 - scholarworks.gsu.edu
Molecular sequence analysis is vital for understanding the functions, structures, and
behaviors of organisms, including viruses, playing a key role in disease prevention and …
behaviors of organisms, including viruses, playing a key role in disease prevention and …
Evolution of RNA Viruses and Cancer Clones: Insights from Sequencing Data
A Juyal - 2024 - scholarworks.gsu.edu
The utilization of extensive sequencing data is essential for exploration of computational
challenges, particularly resolving clustering problems and simulating single-cell tumor …
challenges, particularly resolving clustering problems and simulating single-cell tumor …
Population Genomics of Aneuploidy in Yeast
ESF da Costa - 2022 - search.proquest.com
Aneuploidy is the gain or loss of chromosomes in a cell, has major effects in eukaryotes and
is linked to cancer and genetic diseases in humans. Aneuploidy is common in the wine …
is linked to cancer and genetic diseases in humans. Aneuploidy is common in the wine …
Analysis of Aneuploidy Spectrum From Whole-Genome Sequencing Provides Rapid Assessment of Clonal Variation Within Established Cancer Cell Lines
Background: The revolution in next-generation sequencing (NGS) technology has allowed
easy access and sharing of high-throughput sequencing datasets of cancer cell lines and …
easy access and sharing of high-throughput sequencing datasets of cancer cell lines and …
Enhanced Bayesian detection for copy number alterations from next-generation sequencing data
Z Yu, F Du - 2021 IEEE International Conference on …, 2021 - ieeexplore.ieee.org
Next-generation sequencing (NGS) promises highresolution landscapes of cancer
genomes, especially the genomewide copy number alterations (CNAs). Detecting CNAs …
genomes, especially the genomewide copy number alterations (CNAs). Detecting CNAs …
Cytogenomic Changes in Sporadic Colorectal Cancer and Surrounding Nonneoplastic Tissues: The Relevance of Subtelomeric Copy Number Variations
M Rocha, EA Zanardo, AT Dias, FAR Madia… - 2021 - researchsquare.com
The purpose of this study was to investigate the relevance of subtelomeric cytogenomic
changes in patients with sporadic colorectal cancer (CRC) using multiplex ligation …
changes in patients with sporadic colorectal cancer (CRC) using multiplex ligation …