Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

Peptidomics

R Hellinger, A Sigurdsson, W Wu… - Nature Reviews …, 2023 - nature.com
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …

A high-quality genome compendium of the human gut microbiome of Inner Mongolians

H **, K Quan, Q He, LY Kwok, T Ma, Y Li, F Zhao… - Nature …, 2023 - nature.com
Metagenome-based resources have revealed the diversity and function of the human gut
microbiome, but further understanding is limited by insufficient genome quality and a lack of …

Biosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing

V Waschulin, C Borsetto, R James… - The ISME …, 2022 - academic.oup.com
The growing problem of antibiotic resistance has led to the exploration of uncultured
bacteria as potential sources of new antimicrobials. PCR amplicon analyses and short-read …

GenoVi, an open-source automated circular genome visualizer for bacteria and archaea

A Cumsille, RE Durán… - PLoS Computational …, 2023 - journals.plos.org
The increase in microbial sequenced genomes from pure cultures and metagenomic
samples reflects the current attainability of whole-genome and shotgun sequencing …

[КНИГА][B] Natural product biosynthesis: chemical logic and enzymatic machinery

CT Walsh, Y Tang - 2017 - books.google.com
Authored by leading experts in the enzymology of natural product biosynthesis, this textbook
provides a thorough description of the types of natural products, the biosynthetic pathways …

Glycerol waste to value added products and its potential applications

CR Chilakamarry, AMM Sakinah, AW Zularisam… - Systems Microbiology …, 2021 - Springer
The rapid industrial and economic development runs on fossil fuel and other energy
sources. Limited oil reserves, environmental issues, and high transportation costs lead …

Metagenomics: a path to understanding the gut microbiome

S Yen, JS Johnson - Mammalian Genome, 2021 - Springer
The gut microbiome is a major determinant of host health, yet it is only in the last 2 decades
that the advent of next-generation sequencing has enabled it to be studied at a genomic …

New insights into the threshold values of multi-locus sequence analysis, average nucleotide identity and digital DNA–DNA hybridization in delineating Streptomyces …

S Hu, K Li, Y Zhang, Y Wang, L Fu, Y **ao… - Frontiers in …, 2022 - frontiersin.org
Multi-locus sequence analysis (MLSA) has been proved to be a useful method for
Streptomyces identification and MLSA distance of 0.007 is considered as the boundary …

The microbial dark matter and “wanted list” in worldwide wastewater treatment plants

Y Zhang, Y Wang, M Tang, J Zhou, T Zhang - Microbiome, 2023 - Springer
Abstract Background Wastewater treatment plants (WWTPs) are one of the largest
biotechnology applications in the world and are of critical importance to modern urban …