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Advancing microbial sciences by individual-based modelling
Remarkable technological advances have revealed ever more properties and behaviours of
individual microorganisms, but the novel data generated by these techniques have not yet …
individual microorganisms, but the novel data generated by these techniques have not yet …
Agent-based models in cellular systems
This mini-review discusses agent-based models as modeling techniques for studying
pattern formation of multi-cellular systems in biology. We introduce and compare different …
pattern formation of multi-cellular systems in biology. We introduce and compare different …
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
Recent advances focusing on the metabolic interactions within and between cellular
populations have emphasized the importance of microbial communities for human health …
populations have emphasized the importance of microbial communities for human health …
Agent-based modeling of microbial communities
K Nagarajan, C Ni, T Lu - ACS synthetic biology, 2022 - ACS Publications
Microbial communities are complex living systems that populate the planet with diverse
functions and are increasingly harnessed for practical human needs. To deepen the …
functions and are increasingly harnessed for practical human needs. To deepen the …
Pathways to cellular supremacy in biocomputing
Synthetic biology uses living cells as the substrate for performing human-defined
computations. Many current implementations of cellular computing are based on the …
computations. Many current implementations of cellular computing are based on the …
A systematic literature review of agents applied in healthcare
D Isern, A Moreno - Journal of medical systems, 2016 - Springer
Intelligent agents and healthcare have been intimately linked in the last years. The intrinsic
complexity and diversity of care can be tackled with the flexibility, dynamics and reliability of …
complexity and diversity of care can be tackled with the flexibility, dynamics and reliability of …
Agent-based modelling in synthetic biology
TE Gorochowski - Essays in biochemistry, 2016 - portlandpress.com
Biological systems exhibit complex behaviours that emerge at many different levels of
organization. These span the regulation of gene expression within single cells to the use of …
organization. These span the regulation of gene expression within single cells to the use of …
A mechanistic Individual-based Model of microbial communities
Accurate predictive modelling of the growth of microbial communities requires the credible
representation of the interactions of biological, chemical and mechanical processes …
representation of the interactions of biological, chemical and mechanical processes …
[HTML][HTML] Even allocation of benefits stabilizes microbial community engaged in metabolic division of labor
Microbial communities execute metabolic pathways to drive global nutrient cycles. Within a
community, functionally specialized strains can perform different yet complementary steps …
community, functionally specialized strains can perform different yet complementary steps …
Integrating systems and synthetic biology to understand and engineer microbiomes
Microbiomes are complex and ubiquitous networks of microorganisms whose seemingly
limitless chemical transformations could be harnessed to benefit agriculture, medicine, and …
limitless chemical transformations could be harnessed to benefit agriculture, medicine, and …