A million peptide motifs for the molecular biologist

P Tompa, NE Davey, TJ Gibson, MM Babu - Molecular cell, 2014 - cell.com
A molecular description of functional modules in the cell is the focus of many high-
throughput studies in the postgenomic era. A large portion of biomolecular interactions in …

Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

[HTML][HTML] Protein complexes are under evolutionary selection to assemble via ordered pathways

JA Marsh, H Hernandez, Z Hall, SE Ahnert, T Perica… - Cell, 2013 - cell.com
Is the order in which proteins assemble into complexes important for biological function?
Here, we seek to address this by searching for evidence of evolutionary selection for …

Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

RA Studer, BH Dessailly, CA Orengo - Biochemical journal, 2013 - portlandpress.com
The present review focuses on the evolution of proteins and the impact of amino acid
mutations on function from a structural perspective. Proteins evolve under the law of natural …

Principles of assembly reveal a periodic table of protein complexes

SE Ahnert, JA Marsh, H Hernández, CV Robinson… - Science, 2015 - science.org
INTRODUCTION The assembly of proteins into complexes is crucial for most biological
processes. The three-dimensional structures of many thousands of homomeric and …

The G protein-coupled receptor heterodimer network (GPCR-HetNet) and its hub components

DO Borroto-Escuela, I Brito… - International journal of …, 2014 - mdpi.com
G protein-coupled receptors (GPCRs) oligomerization has emerged as a vital characteristic
of receptor structure. Substantial experimental evidence supports the existence of GPCR …

Buffering of genetic dominance by allele-specific protein complex assembly

M Badonyi, JA Marsh - Science Advances, 2023 - science.org
Protein complex assembly often occurs while subunits are being translated, resulting in
complexes whose subunits were translated from the same mRNA in an allele-specific …

The role of protein complexes in human genetic disease

LT Bergendahl, L Gerasimavicius, J Miles… - Protein …, 2019 - Wiley Online Library
Many human genetic disorders are caused by mutations in protein‐coding regions of DNA.
Taking protein structure into account has therefore provided key insight into the molecular …

Comparative structural analysis of 20S proteasome ortholog protein complexes by native mass spectrometry

S Vimer, G Ben-Nissan, D Morgenstern… - ACS Central …, 2020 - ACS Publications
Ortholog protein complexes are responsible for equivalent functions in different organisms.
However, during evolution, each organism adapts to meet its physiological needs and the …

Frequent transitions in self-assembly across the evolution of a central metabolic enzyme

FL Sendker, T Schlotthauer, CN Mais, YK Lo… - Nature …, 2024 - nature.com
Many enzymes assemble into homomeric protein complexes comprising multiple copies of
one protein. Because structural form is usually assumed to follow function in biochemistry …