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Optimal transport for single-cell and spatial omics
High-throughput single-cell profiling provides an unprecedented ability to uncover the
molecular states of millions of cells. These technologies are, however, destructive to cells …
molecular states of millions of cells. These technologies are, however, destructive to cells …
Sit: Exploring flow and diffusion-based generative models with scalable interpolant transformers
Abstract We present Scalable Interpolant Transformers (SiT), a family of generative models
built on the backbone of Diffusion Transformers (DiT). The interpolant framework, which …
built on the backbone of Diffusion Transformers (DiT). The interpolant framework, which …
Improving and generalizing flow-based generative models with minibatch optimal transport
Continuous normalizing flows (CNFs) are an attractive generative modeling technique, but
they have thus far been held back by limitations in their simulation-based maximum …
they have thus far been held back by limitations in their simulation-based maximum …
Diffusion schrödinger bridge matching
Solving transport problems, ie finding a map transporting one given distribution to another,
has numerous applications in machine learning. Novel mass transport methods motivated …
has numerous applications in machine learning. Novel mass transport methods motivated …
Discrete flow matching
Abstract Despite Flow Matching and diffusion models having emerged as powerful
generative paradigms for continuous variables such as images and videos, their application …
generative paradigms for continuous variables such as images and videos, their application …
Equivariant flow matching
Normalizing flows are a class of deep generative models that are especially interesting for
modeling probability distributions in physics, where the exact likelihood of flows allows …
modeling probability distributions in physics, where the exact likelihood of flows allows …
AlphaFold meets flow matching for generating protein ensembles
The biological functions of proteins often depend on dynamic structural ensembles. In this
work, we develop a flow-based generative modeling approach for learning and sampling the …
work, we develop a flow-based generative modeling approach for learning and sampling the …
Equivariant flow matching with hybrid probability transport for 3d molecule generation
The generation of 3D molecules requires simultaneously deciding the categorical features
(atom types) and continuous features (atom coordinates). Deep generative models …
(atom types) and continuous features (atom coordinates). Deep generative models …
Perflow: Piecewise rectified flow as universal plug-and-play accelerator
Abstract We present Piecewise Rectified Flow (PeRFlow), a flow-based method for
accelerating diffusion models. PeRFlow divides the sampling process of generative flows …
accelerating diffusion models. PeRFlow divides the sampling process of generative flows …
Fast protein backbone generation with se (3) flow matching
We present FrameFlow, a method for fast protein backbone generation using SE (3) flow
matching. Specifically, we adapt FrameDiff, a state-of-the-art diffusion model, to the flow …
matching. Specifically, we adapt FrameDiff, a state-of-the-art diffusion model, to the flow …