[HTML][HTML] Cell-cycle–specific autoencoding improves cluster analysis of cycling cardiomyocytes

T Nguyen, Y Nakada, Y Wu, J Zhao, DJ Garry… - Stem Cells, 2024‏ - academic.oup.com
Background Our previous analyses of cardiomyocyte single-nucleus RNA sequencing
(snRNAseq) data from the hearts of fetal pigs and pigs that underwent apical resection …

TransNeT-CGP: A cluster-based comorbid gene prioritization by integrating transcriptomics and network-topological features

KR Saranya, ER Vimina, FR Pinto - Computational Biology and Chemistry, 2024‏ - Elsevier
The local disruptions caused by the genes of one disease can influence the pathways
associated with the other diseases resulting in comorbidity. For gene therapies, it is …

Biological network mining

Z Yue, D Yan, G Guo, JY Chen - Modeling transcriptional regulation …, 2021‏ - Springer
In this book chapter, we introduce a pipeline to mine significant biomedical entities (or
bioentities) in biological networks. Our focus is on prioritizing both bioentities themselves …

Analyzing Patient-Sharing Network Using an Administrative Claim Database in Japan

T Ishikawa, A Kako, H Yoshimoto… - … 2023—The Future Is …, 2024‏ - ebooks.iospress.nl
We analyzed the behavior of patient with a focus on patient-sharing based on the
methodology of network analysis. We used an administrative healthcare claims database …

Prioritizing Complex Disease Genes from Heterogeneous Public Databases

E Gong, JY Chen - bioRxiv, 2023‏ - biorxiv.org
Background Complex human diseases are defined not only by sophisticated patterns of
genetic variants/mutations upstream but also by many interplaying genes, RNAs, and …