[HTML][HTML] How to build the virtual cell with artificial intelligence: Priorities and opportunities

C Bunne, Y Roohani, Y Rosen, A Gupta, X Zhang… - Cell, 2024 - cell.com
Cells are essential to understanding health and disease, yet traditional models fall short of
modeling and simulating their function and behavior. Advances in AI and omics offer …

[HTML][HTML] Therapeutic monoclonal antibodies against cancer: present and future

M Delgado, JA Garcia-Sanz - Cells, 2023 - mdpi.com
A series of monoclonal antibodies with therapeutic potential against cancer have been
generated and developed. Ninety-one are currently used in the clinics, either alone or in …

Pan-cancer genetic analysis of cuproptosis and copper metabolism-related gene set

H Liu, T Tang - Frontiers in oncology, 2022 - frontiersin.org
Background A recent paper has revealed a novel cell death pathway, cuproptosis, a
programmed cell death based on copper. This study aimed to evaluate the pan-cancer …

Distribution of miRNA expression across human tissues

N Ludwig, P Leidinger, K Becker, C Backes… - Nucleic acids …, 2016 - academic.oup.com
We present a human miRNA tissue atlas by determining the abundance of 1997 miRNAs in
61 tissue biopsies of different organs from two individuals collected post-mortem. One …

Fully automated sequential immunofluorescence (seqIF) for hyperplex spatial proteomics

F Rivest, D Eroglu, B Pelz, J Kowal, A Kehren… - Scientific Reports, 2023 - nature.com
Tissues are complex environments where different cell types are in constant interaction with
each other and with non-cellular components. Preserving the spatial context during …

Noncoding RNA NORAD regulates genomic stability by sequestering PUMILIO proteins

S Lee, F Kopp, TC Chang, A Sataluri, B Chen… - Cell, 2016 - cell.com
Long noncoding RNAs (lncRNAs) have emerged as regulators of diverse biological
processes. Here, we describe the initial functional analysis of a poorly characterized human …

[HTML][HTML] The extracellular matrix: Tools and insights for the “omics” era

A Naba, KR Clauser, H Ding, CA Whittaker, SA Carr… - Matrix Biology, 2016 - Elsevier
The extracellular matrix (ECM) is a fundamental component of multicellular organisms that
provides mechanical and chemical cues that orchestrate cellular and tissue organization …

Old, new and emerging functions of caspases

S Shalini, L Dorstyn, S Dawar, S Kumar - Cell Death & Differentiation, 2015 - nature.com
Caspases are proteases with a well-defined role in apoptosis. However, increasing
evidence indicates multiple functions of caspases outside apoptosis. Caspase-1 and …

standR: spatial transcriptomic analysis for GeoMx DSP data

N Liu, DD Bhuva, A Mohamed, M Bokelund… - Nucleic Acids …, 2024 - academic.oup.com
To gain a better understanding of the complexity of gene expression in normal and diseased
tissues it is important to account for the spatial context and identity of cells in situ. State-of …

miRNATissueAtlas2: an update to the human miRNA tissue atlas

A Keller, L Gröger, T Tschernig, J Solomon… - Nucleic acids …, 2022 - academic.oup.com
Small non-coding RNAs (sncRNAs) are pervasive regulators of physiological and
pathological processes. We previously developed the human miRNA Tissue Atlas, detailing …